STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysBCys regulon transcriptional activator; See PMID:20190049 for expression data; Belongs to the LysR transcriptional regulatory family. (324 aa)    
Predicted Functional Partners:
cysE
Serine O-acetyltransferase; See PMID:20190049 for expression data.
      
 0.653
AAO56550.1
Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
   
 0.592
fadH
2,4-dienoyl-CoA reductase; Similar to GP:9716173, and SP:P42593; identified by sequence similarity; putative.
   
 
 0.582
AAO55792.1
Universal stress protein family; See PMID:20190049 for expression data.
       0.522
AAO56416.1
Nitrogen assimilation regulatory protein Nac, putative; Similar to SP:Q47005, GB:X64063, SP:P28765, and PID:1335662; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.522
AAO57015.1
Transcriptional regulator, LysR family; Similar to GP:15021663; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.522
AAO56129.1
Transcriptional regulator, LysR family; Similar to GP:1799657; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.498
AAO56303.1
Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.
  
   
 0.494
mucB
Sigma factor algU regulatory protein MucB; See PMID:20190049 for expression data; similar to SP:P38108; identified by sequence similarity; putative.
  
     0.494
AAO55077.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.486
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.