STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fliAMotility sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (246 aa)    
Predicted Functional Partners:
AAO55443.1
Negative regulator of flagellin synthesis FlgM, putative; See PMID:20190049 for expression data; similar to SP:P39809; identified by sequence similarity; putative.
 
 0.994
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
 
 0.974
flgD
Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.970
flgC
Flagellar basal-body rod protein FlgC; See PMID:20190049 for expression data; similar to SP:P75935, GB:Z29327, and PID:441236; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
 
 
 0.968
flgK
Flagellar hook-associated protein FlgK; See PMID:20190049 for expression data; similar to GP:13183733, and SP:P33235; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
 
  
 0.965
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.963
fleN
Flagellar synthesis regulator FleN; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02374.
 
  
 0.958
flgL
Flagellar hook-associated protein FlgL; See PMID:20190049 for expression data; similar to SP:P29744; identified by sequence similarity; putative.
 
  
 0.954
flgF
Flagellar basal-body rod protein FlgF; See PMID:20190049 for expression data; similar to SP:P75938; identified by sequence similarity; putative.
 
  
 0.947
fliD
Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
  
 0.947
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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