STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garDD-galactarate dehydratase; See PMID:20190049 for expression data; similar to SP:P42240, and SP:P39829; identified by sequence similarity; putative. (517 aa)    
Predicted Functional Partners:
gudD
Glucarate dehydratase; Similar to SP:P42206, GB:M11953, GB:L10120, GB:X61441, PID:2218035, PID:2275585, PID:292779, PID:338868, PID:37450, PID:553696, PID:553702, PID:975610, and PID:975611; identified by sequence similarity; putative.
 
 
 0.978
AAO56404.1
Mandelate racemase/muconate lactonizing enzyme family protein; Similar to SP:Q9RDE9; identified by sequence similarity; putative; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.975
AAO57997.1
Dihydrodipicolinate synthetase family protein; Similar to GP:15160263; identified by sequence similarity; putative; Belongs to the DapA family.
 
  
 0.975
AAO57996.1
MFS transporter, phthalate permease family; Similar to SP:Q46916, GB:M64571, GB:U19727, SP:P27816, PID:187383, and PID:641916; identified by sequence similarity; putative.
 
  
 0.917
eda-2
4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate; Similar to SP:P50846; identified by sequence similarity; putative.
 
  
 0.665
AAO56726.1
Mandelate racemase/muconate lactonizing enzyme family protein; Similar to GP:15160264; identified by sequence similarity; putative; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.658
AAO57998.1
Transcriptional regulator, GntR family; See PMID:20190049 for expression data; similar to GP:15160259; identified by sequence similarity; putative.
 
   
 0.626
AAO54581.1
TRAP dicarboxylate transporter, DctQ subunit, putative.
 
     0.588
uxuB
D-mannonate oxidoreductase; Similar to SP:P39160; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P39160, identified by sequence similarity, putative; Belongs to the mannitol dehydrogenase family.
 
  
 0.559
AAO55697.1
MFS transporter, phthalate permease family; Similar to SP:P31457; identified by sequence similarity; putative.
 
  
 0.513
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.