ku protein (Pseudomonas syringae tomato) - STRING interaction network

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ku

KU domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (299 aa)

Predicted Functional Partners:

AAO56939.1

0.994

AAO56468.1

0.723

AAO57591.1

0.624

AAO56179.1

0.549

Your Current Organism:

Pseudomonas syringae tomato

NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAO56179.1	AAO56468.1	PSPTO_2677	PSPTO_2976	Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GP:15162052; identified by sequence similarity; putative.	DNA topoisomerase, type I, putative; Identified by match to PFAM protein family HMM PF01028.	0.605
AAO56179.1	AAO56939.1	PSPTO_2677	PSPTO_3464	Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GP:15162052; identified by sequence similarity; putative.	DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative.	0.415
AAO56179.1	ku	PSPTO_2677	PSPTO_3465	Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GP:15162052; identified by sequence similarity; putative.	KU domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.549
AAO56468.1	AAO56179.1	PSPTO_2976	PSPTO_2677	DNA topoisomerase, type I, putative; Identified by match to PFAM protein family HMM PF01028.	Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GP:15162052; identified by sequence similarity; putative.	0.605
AAO56468.1	AAO56939.1	PSPTO_2976	PSPTO_3464	DNA topoisomerase, type I, putative; Identified by match to PFAM protein family HMM PF01028.	DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative.	0.824
AAO56468.1	AAO57591.1	PSPTO_2976	PSPTO_4135	DNA topoisomerase, type I, putative; Identified by match to PFAM protein family HMM PF01028.	DNA ligase, ATP-dependent; Similar to GP:15155825; identified by sequence similarity; putative.	0.625
AAO56468.1	ku	PSPTO_2976	PSPTO_3465	DNA topoisomerase, type I, putative; Identified by match to PFAM protein family HMM PF01028.	KU domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.723
AAO56939.1	AAO56179.1	PSPTO_3464	PSPTO_2677	DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative.	Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GP:15162052; identified by sequence similarity; putative.	0.415
AAO56939.1	AAO56468.1	PSPTO_3464	PSPTO_2976	DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative.	DNA topoisomerase, type I, putative; Identified by match to PFAM protein family HMM PF01028.	0.824
AAO56939.1	AAO57591.1	PSPTO_3464	PSPTO_4135	DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative.	DNA ligase, ATP-dependent; Similar to GP:15155825; identified by sequence similarity; putative.	0.693
AAO56939.1	ku	PSPTO_3464	PSPTO_3465	DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative.	KU domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.994
AAO57591.1	AAO56468.1	PSPTO_4135	PSPTO_2976	DNA ligase, ATP-dependent; Similar to GP:15155825; identified by sequence similarity; putative.	DNA topoisomerase, type I, putative; Identified by match to PFAM protein family HMM PF01028.	0.625
AAO57591.1	AAO56939.1	PSPTO_4135	PSPTO_3464	DNA ligase, ATP-dependent; Similar to GP:15155825; identified by sequence similarity; putative.	DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative.	0.693
AAO57591.1	ku	PSPTO_4135	PSPTO_3465	DNA ligase, ATP-dependent; Similar to GP:15155825; identified by sequence similarity; putative.	KU domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.624
ku	AAO56179.1	PSPTO_3465	PSPTO_2677	KU domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GP:15162052; identified by sequence similarity; putative.	0.549
ku	AAO56468.1	PSPTO_3465	PSPTO_2976	KU domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	DNA topoisomerase, type I, putative; Identified by match to PFAM protein family HMM PF01028.	0.723
ku	AAO56939.1	PSPTO_3465	PSPTO_3464	KU domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative.	0.994
ku	AAO57591.1	PSPTO_3465	PSPTO_4135	KU domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	DNA ligase, ATP-dependent; Similar to GP:15155825; identified by sequence similarity; putative.	0.624

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