Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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trmUtRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (376 aa)    
Predicted Functional Partners:
hflD
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:9948694, and GP:9948694; identified by sequence similarity; putative.
  
  
 0.971
AAO56819.1
Conserved hypothetical protein; Part of a sulfur-relay system.
   
 0.966
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
 
 
 0.847
purB
Adenylosuccinate lyase; See PMID:20190049 for expression data; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
  
 0.833
gidA
Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
 
 
 0.828
nudJ
mutT/nudix family protein; Belongs to the Nudix hydrolase family. NudJ subfamily.
  
    0.802
AAO56839.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
     
 0.767
pheT
phenylalanyl-tRNA synthetase, beta subunit; See PMID:20190049 for expression data; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.748
ribF
Riboflavin biosynthesis protein RibF; See PMID:20190049 for expression data; Belongs to the ribF family.
 
  
 0.742
AAO56840.1
Acetyltransferase, GNAT family; See PMID:20190049 for expression data.
 
     0.735
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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