STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE-2Ribosomal protein L31; Binds the 23S rRNA. (75 aa)    
Predicted Functional Partners:
rpmB
Ribosomal protein L28; Identified by match to TIGR protein family HMM TIGR00009; see PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.951
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.946
rpmG
Ribosomal protein L33; Identified by match to PFAM protein family HMM PF00471; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.943
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.943
rpmA
Ribosomal protein L27; See PMID:20190049 for expression data; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.942
rpmJ
Ribosomal protein L36; See PMID:20190049 for expression data; similar to SP:P21194; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.941
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.941
rpmF
Ribosomal protein L32; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01783; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.941
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity).
  
 
 0.939
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
 
 
 0.936
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.