STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tldDtldD protein; See PMID:20190049 for expression data; similar to SP:P46473, GB:M22995, GB:X12533, SP:P10113, PID:35859, PID:412180, and PID:511856; identified by sequence similarity; putative. (479 aa)    
Predicted Functional Partners:
AAO57915.1
Hydrolase, carbon-nitrogen family; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00795.
 
    0.845
pmbA
pmbA protein; Similar to SP:P24231; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P24231, identified by sequence similarity, putative.
 
 
0.812
AAO57916.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02774.
     
 0.674
AAO57919.1
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
 
     0.468
cafA
Ribonuclease G; See PMID:20190049 for expression data; similar to SP:P25537; identified by sequence similarity; putative.
       0.446
maf-2
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.446
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.