Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tldDtldD protein; See PMID:20190049 for expression data; similar to SP:P46473, GB:M22995, GB:X12533, SP:P10113, PID:35859, PID:412180, and PID:511856; identified by sequence similarity; putative. (479 aa)    
Predicted Functional Partners:
AAO57915.1
Hydrolase, carbon-nitrogen family; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00795.
 
    0.914
pmbA
pmbA protein; Similar to SP:P24231; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P24231, identified by sequence similarity, putative.
 
 
0.902
AAO57916.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02774.
     
 0.819
AAO57919.1
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
 
     0.707
cafA
Ribonuclease G; See PMID:20190049 for expression data; similar to SP:P25537; identified by sequence similarity; putative.
       0.696
maf-2
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.696
mreB
Rod shape-determining protein MreB; Similar to SP:P13519; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P13519, identified by sequence similarity, putative.
 
     0.667
mreC
Rod shape-determining protein MreC; See PMID:20190049 for expression data; similar to GP:6652781; identified by sequence similarity; putative.
       0.660
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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