Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ureBUrease, beta subunit; See PMID:20190049 for expression data; Belongs to the urease beta subunit family. (102 aa)    
Predicted Functional Partners:
ureA
Urease, gamma subunit; See PMID:20190049 for expression data; Belongs to the urease gamma subunit family.
 0.999
ureC
Urease, alpha subunit; See PMID:20190049 for expression data; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
 0.999
ureD-2
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.993
ureAB
Urease, beta/gamma subunit; Similar to GP:14599161; identified by sequence similarity; putative; In the N-terminal section; belongs to the urease gamma subunit family.
 
0.985
ureF-2
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.968
alc
Allantoicase; See PMID:20190049 for expression data; similar to SP:Q9W6S5; identified by sequence similarity; putative; Belongs to the allantoicase family.
    
  0.904
ureG-1
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
  
 0.902
ureG-2
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
  
 0.902
allA
Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
    
  0.901
AAO54883.1
Identified by match to TIGR protein family HMM TIGR00132.
     
  0.900
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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