TMEM47 protein (Aquila chrysaetos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TMEM47

Transmembrane protein 47. (181 aa)

Predicted Functional Partners:

LHFPL2

0.521

KBTBD2

0.499

ENSACCP00020004811

0.445

ARVCF

0.445

CTNND1

0.445

PKP4

0.445

ENSACCP00020019331

0.445

ENSACCP00020019346

0.445

UBE2V2

0.433

TMEM94

0.422

Your Current Organism:

Aquila chrysaetos

NCBI taxonomy Id: 223781
Other names: A. chrysaetos chrysaetos, Aquila chrysaetos chrysaetos

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARVCF	ENSACCP00020019346	ENSACCP00020004885	ENSACCP00020019346	ARVCF delta catenin family member.	annotation not available	0.429
ARVCF	TMEM47	ENSACCP00020004885	ENSACCP00020003023	ARVCF delta catenin family member.	Transmembrane protein 47.	0.445
CTNND1	TMEM47	ENSACCP00020015208	ENSACCP00020003023	Catenin delta 1.	Transmembrane protein 47.	0.445
ENSACCP00020004811	TMEM47	ENSACCP00020004811	ENSACCP00020003023	annotation not available	Transmembrane protein 47.	0.445
ENSACCP00020019331	ENSACCP00020019346	ENSACCP00020019331	ENSACCP00020019346	annotation not available	annotation not available	0.899
ENSACCP00020019331	TMEM47	ENSACCP00020019331	ENSACCP00020003023	annotation not available	Transmembrane protein 47.	0.445
ENSACCP00020019346	ARVCF	ENSACCP00020019346	ENSACCP00020004885	annotation not available	ARVCF delta catenin family member.	0.429
ENSACCP00020019346	ENSACCP00020019331	ENSACCP00020019346	ENSACCP00020019331	annotation not available	annotation not available	0.899
ENSACCP00020019346	TMEM47	ENSACCP00020019346	ENSACCP00020003023	annotation not available	Transmembrane protein 47.	0.445
KBTBD2	TMEM47	ENSACCP00020006205	ENSACCP00020003023	Kelch repeat and BTB domain containing 2.	Transmembrane protein 47.	0.499
LHFPL2	TMEM47	ENSACCP00020016423	ENSACCP00020003023	LHFPL tetraspan subfamily member 2.	Transmembrane protein 47.	0.521
PKP4	TMEM47	ENSACCP00020018585	ENSACCP00020003023	Plakophilin 4.	Transmembrane protein 47.	0.445
TMEM47	ARVCF	ENSACCP00020003023	ENSACCP00020004885	Transmembrane protein 47.	ARVCF delta catenin family member.	0.445
TMEM47	CTNND1	ENSACCP00020003023	ENSACCP00020015208	Transmembrane protein 47.	Catenin delta 1.	0.445
TMEM47	ENSACCP00020004811	ENSACCP00020003023	ENSACCP00020004811	Transmembrane protein 47.	annotation not available	0.445
TMEM47	ENSACCP00020019331	ENSACCP00020003023	ENSACCP00020019331	Transmembrane protein 47.	annotation not available	0.445
TMEM47	ENSACCP00020019346	ENSACCP00020003023	ENSACCP00020019346	Transmembrane protein 47.	annotation not available	0.445
TMEM47	KBTBD2	ENSACCP00020003023	ENSACCP00020006205	Transmembrane protein 47.	Kelch repeat and BTB domain containing 2.	0.499
TMEM47	LHFPL2	ENSACCP00020003023	ENSACCP00020016423	Transmembrane protein 47.	LHFPL tetraspan subfamily member 2.	0.521
TMEM47	PKP4	ENSACCP00020003023	ENSACCP00020018585	Transmembrane protein 47.	Plakophilin 4.	0.445