STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX54DEAD-box helicase 54. (817 aa)    
Predicted Functional Partners:
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.998
BOP1
BOP1 ribosomal biogenesis factor.
   
 0.998
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
  
 0.997
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 0.994
DDX27
DEAD-box helicase 27.
  
0.993
DDX55
DEAD-box helicase 55.
  
0.993
GTPBP4
GTP binding protein 4.
   
 0.991
DDX18
DEAD-box helicase 18.
  
0.990
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
 0.990
GNL2
G protein nucleolar 2.
  
 0.990
Your Current Organism:
Aquila chrysaetos
NCBI taxonomy Id: 223781
Other names: A. chrysaetos chrysaetos, Aquila chrysaetos chrysaetos
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.