STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO89328.1Hypothetical protein. (87 aa)    
Predicted Functional Partners:
SFQ01688.1
CopG antitoxin of type II toxin-antitoxin system.
 
  
 0.836
SFO89357.1
Hypothetical protein.
       0.773
SFO89232.1
Ca-activated chloride channel family protein.
       0.714
SFO89269.1
Ca-activated chloride channel family protein.
       0.714
SFO89380.1
Ca-activated chloride channel family protein.
       0.648
SFO89406.1
Oxygen tolerance.
       0.648
SFO89108.1
Nitrate reductase delta subunit.
       0.455
SFO89148.1
4Fe-4S binding domain-containing protein.
       0.455
SFO89169.1
Shikimate 5-dehydrogenase.
       0.455
SFO89207.1
Hypothetical protein.
       0.455
Your Current Organism:
Hydrogenimonas thermophila
NCBI taxonomy Id: 223786
Other names: ATCC BAA-737, H. thermophila, Hydrogenimonas thermophila Takai et al. 2004, JCM 11971, strain EP1-55-1%
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.