SFO92830.1 protein (Hydrogenimonas thermophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFO92830.1

Methyl-accepting chemotaxis protein. (533 aa)

Predicted Functional Partners:

SFP06980.1

0.994

SFP33006.1

0.977

SFO88543.1

0.970

SFO88608.1

0.968

SFP33244.1

0.964

SFP06951.1

0.963

SFP07009.1

0.961

SFP67738.1

0.953

SFP33045.1

0.952

SFO88516.1

0.950

Your Current Organism:

Hydrogenimonas thermophila

NCBI taxonomy Id: 223786
Other names: ATCC BAA-737, H. thermophila, Hydrogenimonas thermophila Takai et al. 2004, JCM 11971, strain EP1-55-1%

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFO88516.1	SFO88543.1	SAMN05216234_10191	SAMN05216234_10192	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, sensor kinase CheA.	0.999
SFO88516.1	SFO88608.1	SAMN05216234_10191	SAMN05216234_10194	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, response regulator CheV.	0.951
SFO88516.1	SFO92830.1	SAMN05216234_10191	SAMN05216234_10262	Purine-binding chemotaxis protein CheW.	Methyl-accepting chemotaxis protein.	0.950
SFO88516.1	SFP06951.1	SAMN05216234_10191	SAMN05216234_105101	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, response regulator CheV.	0.733
SFO88516.1	SFP06980.1	SAMN05216234_10191	SAMN05216234_105102	Purine-binding chemotaxis protein CheW.	Histidine kinase.	0.997
SFO88516.1	SFP07009.1	SAMN05216234_10191	SAMN05216234_105103	Purine-binding chemotaxis protein CheW.	Purine-binding chemotaxis protein CheW.	0.587
SFO88516.1	SFP33006.1	SAMN05216234_10191	SAMN05216234_11526	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, response regulator CheV.	0.798
SFO88516.1	SFP33244.1	SAMN05216234_10191	SAMN05216234_11533	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, sensor kinase CheA.	0.994
SFO88516.1	SFP67738.1	SAMN05216234_10191	SAMN05216234_13215	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, response regulator CheV.	0.693
SFO88543.1	SFO88516.1	SAMN05216234_10192	SAMN05216234_10191	Two-component system, chemotaxis family, sensor kinase CheA.	Purine-binding chemotaxis protein CheW.	0.999
SFO88543.1	SFO88608.1	SAMN05216234_10192	SAMN05216234_10194	Two-component system, chemotaxis family, sensor kinase CheA.	Two-component system, chemotaxis family, response regulator CheV.	0.998
SFO88543.1	SFO92830.1	SAMN05216234_10192	SAMN05216234_10262	Two-component system, chemotaxis family, sensor kinase CheA.	Methyl-accepting chemotaxis protein.	0.970
SFO88543.1	SFP06951.1	SAMN05216234_10192	SAMN05216234_105101	Two-component system, chemotaxis family, sensor kinase CheA.	Two-component system, chemotaxis family, response regulator CheV.	0.994
SFO88543.1	SFP06980.1	SAMN05216234_10192	SAMN05216234_105102	Two-component system, chemotaxis family, sensor kinase CheA.	Histidine kinase.	0.865
SFO88543.1	SFP07009.1	SAMN05216234_10192	SAMN05216234_105103	Two-component system, chemotaxis family, sensor kinase CheA.	Purine-binding chemotaxis protein CheW.	0.994
SFO88543.1	SFP33006.1	SAMN05216234_10192	SAMN05216234_11526	Two-component system, chemotaxis family, sensor kinase CheA.	Two-component system, chemotaxis family, response regulator CheV.	0.994
SFO88543.1	SFP33045.1	SAMN05216234_10192	SAMN05216234_11527	Two-component system, chemotaxis family, sensor kinase CheA.	Purine-binding chemotaxis protein CheW.	0.994
SFO88543.1	SFP67738.1	SAMN05216234_10192	SAMN05216234_13215	Two-component system, chemotaxis family, sensor kinase CheA.	Two-component system, chemotaxis family, response regulator CheV.	0.993
SFO88608.1	SFO88516.1	SAMN05216234_10194	SAMN05216234_10191	Two-component system, chemotaxis family, response regulator CheV.	Purine-binding chemotaxis protein CheW.	0.951
SFO88608.1	SFO88543.1	SAMN05216234_10194	SAMN05216234_10192	Two-component system, chemotaxis family, response regulator CheV.	Two-component system, chemotaxis family, sensor kinase CheA.	0.998