STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP06809.1DNA-binding beta-propeller fold protein YncE. (438 aa)    
Predicted Functional Partners:
SFP45844.1
Dihydrolipoamide dehydrogenase.
  
 0.993
SFP40199.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
 0.992
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.990
SFO93175.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 0.959
SFO91521.1
Complex iron-sulfur molybdoenzyme family reductase subunit gamma.
  
 0.959
SFO97921.1
Hypothetical protein.
  
 0.959
SFP02168.1
Cytochrome C oxidase, cbb3-type, subunit III.
  
 0.959
SFP35843.1
Sulfur-oxidizing protein SoxX.
  
 0.959
SFP80081.1
Cytochrome P460.
  
 0.959
SFP07470.1
Hypothetical protein.
  
 0.952
Your Current Organism:
Hydrogenimonas thermophila
NCBI taxonomy Id: 223786
Other names: ATCC BAA-737, H. thermophila, Hydrogenimonas thermophila Takai et al. 2004, JCM 11971, strain EP1-55-1%
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