STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP16023.1HDOD domain-containing protein. (265 aa)    
Predicted Functional Partners:
SFP15986.1
Chemotaxis protein CheX, a CheY P-specific phosphatase.
       0.801
SFP15962.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.752
SFP15905.1
DNA polymerase-3 subunit epsilon.
       0.677
trpF
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
       0.641
SFP51009.1
PAS domain S-box-containing protein.
   
 0.608
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
       0.529
SFP32945.1
Response regulator receiver domain-containing protein.
   
 0.502
SFP44152.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
  0.451
SFP03076.1
ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein.
   
 0.435
SFP03142.1
Polar amino acid transport system substrate-binding protein.
   
 0.435
Your Current Organism:
Hydrogenimonas thermophila
NCBI taxonomy Id: 223786
Other names: ATCC BAA-737, H. thermophila, Hydrogenimonas thermophila Takai et al. 2004, JCM 11971, strain EP1-55-1%
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