Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFP12919.1 | SFP18533.1 | SAMN05216234_10717 | SAMN05216234_10933 | Flagellar protein FlaG. | MiaB-like tRNA modifying enzyme. | 0.491 |
SFP18440.1 | SFP18460.1 | SAMN05216234_10929 | SAMN05216234_10930 | ATP-dependent RNA helicase SUPV3L1/SUV3. | Molybdopterin adenylyltransferase. | 0.671 |
SFP18440.1 | SFP18489.1 | SAMN05216234_10929 | SAMN05216234_10931 | ATP-dependent RNA helicase SUPV3L1/SUV3. | Alpha/beta hydrolase fold. | 0.716 |
SFP18440.1 | SFP18510.1 | SAMN05216234_10929 | SAMN05216234_10932 | ATP-dependent RNA helicase SUPV3L1/SUV3. | ATP-dependent metalloprotease FtsH; Belongs to the AAA ATPase family. | 0.662 |
SFP18440.1 | SFP18533.1 | SAMN05216234_10929 | SAMN05216234_10933 | ATP-dependent RNA helicase SUPV3L1/SUV3. | MiaB-like tRNA modifying enzyme. | 0.662 |
SFP18440.1 | SFP18556.1 | SAMN05216234_10929 | SAMN05216234_10934 | ATP-dependent RNA helicase SUPV3L1/SUV3. | Small-conductance mechanosensitive channel. | 0.662 |
SFP18440.1 | SFP18594.1 | SAMN05216234_10929 | SAMN05216234_10936 | ATP-dependent RNA helicase SUPV3L1/SUV3. | Hypothetical protein. | 0.499 |
SFP18440.1 | aroB | SAMN05216234_10929 | SAMN05216234_10935 | ATP-dependent RNA helicase SUPV3L1/SUV3. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.668 |
SFP18460.1 | SFP18440.1 | SAMN05216234_10930 | SAMN05216234_10929 | Molybdopterin adenylyltransferase. | ATP-dependent RNA helicase SUPV3L1/SUV3. | 0.671 |
SFP18460.1 | SFP18489.1 | SAMN05216234_10930 | SAMN05216234_10931 | Molybdopterin adenylyltransferase. | Alpha/beta hydrolase fold. | 0.776 |
SFP18460.1 | SFP18510.1 | SAMN05216234_10930 | SAMN05216234_10932 | Molybdopterin adenylyltransferase. | ATP-dependent metalloprotease FtsH; Belongs to the AAA ATPase family. | 0.799 |
SFP18460.1 | SFP18533.1 | SAMN05216234_10930 | SAMN05216234_10933 | Molybdopterin adenylyltransferase. | MiaB-like tRNA modifying enzyme. | 0.799 |
SFP18460.1 | SFP18556.1 | SAMN05216234_10930 | SAMN05216234_10934 | Molybdopterin adenylyltransferase. | Small-conductance mechanosensitive channel. | 0.799 |
SFP18460.1 | SFP18594.1 | SAMN05216234_10930 | SAMN05216234_10936 | Molybdopterin adenylyltransferase. | Hypothetical protein. | 0.637 |
SFP18460.1 | aroB | SAMN05216234_10930 | SAMN05216234_10935 | Molybdopterin adenylyltransferase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.799 |
SFP18460.1 | tgt | SAMN05216234_10930 | SAMN05216234_10937 | Molybdopterin adenylyltransferase. | tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...] | 0.507 |
SFP18489.1 | SFP18440.1 | SAMN05216234_10931 | SAMN05216234_10929 | Alpha/beta hydrolase fold. | ATP-dependent RNA helicase SUPV3L1/SUV3. | 0.716 |
SFP18489.1 | SFP18460.1 | SAMN05216234_10931 | SAMN05216234_10930 | Alpha/beta hydrolase fold. | Molybdopterin adenylyltransferase. | 0.776 |
SFP18489.1 | SFP18510.1 | SAMN05216234_10931 | SAMN05216234_10932 | Alpha/beta hydrolase fold. | ATP-dependent metalloprotease FtsH; Belongs to the AAA ATPase family. | 0.827 |
SFP18489.1 | SFP18533.1 | SAMN05216234_10931 | SAMN05216234_10933 | Alpha/beta hydrolase fold. | MiaB-like tRNA modifying enzyme. | 0.809 |
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