STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP23046.1Membrane-bound lytic murein transglycosylase D. (401 aa)    
Predicted Functional Partners:
SFO96129.1
Flagellar hook protein FlgE.
  
 
 0.969
SFO96171.1
Flagellar hook protein FlgE.
  
 
 0.923
SFP62773.1
Flagellar basal-body rod protein FlgG.
  
 
 0.923
SFP62801.1
Flagellar basal-body rod protein FlgG.
  
 
 0.923
SFP22808.1
Peptidoglycan glycosyltransferase.
 
 
 0.913
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
   
  0.908
SFP23332.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.903
SFP08847.1
Ricin-type beta-trefoil lectin domain-containing protein.
   
 
 0.900
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
     
 0.891
SFP01003.1
Flagellar motor switch protein FliN/FliY.
 
  
 0.870
Your Current Organism:
Hydrogenimonas thermophila
NCBI taxonomy Id: 223786
Other names: ATCC BAA-737, H. thermophila, Hydrogenimonas thermophila Takai et al. 2004, JCM 11971, strain EP1-55-1%
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