STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP43308.1RND family efflux transporter, MFP subunit. (384 aa)    
Predicted Functional Partners:
SFP43340.1
Outer membrane protein TolC.
 
 0.974
SFP43283.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.949
SFP43365.1
Transcriptional regulator, TetR family.
     
 0.774
SFP49325.1
Outer membrane protein TolC.
 
 0.758
SFP18368.1
Membrane fusion protein, multidrug efflux system.
  
     0.721
SFP69263.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 0.721
SFP18417.1
Outer membrane protein TolC.
 
 0.712
SFP91973.1
Outer membrane protein TolC.
 
 0.678
SFO96672.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.676
SFP67761.1
HlyD family secretion protein.
  
     0.633
Your Current Organism:
Hydrogenimonas thermophila
NCBI taxonomy Id: 223786
Other names: ATCC BAA-737, H. thermophila, Hydrogenimonas thermophila Takai et al. 2004, JCM 11971, strain EP1-55-1%
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