Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFP06552.1 | SFP83189.1 | SAMN05216234_10585 | SAMN05216234_1456 | DnaJ domain-containing protein. | Sir2 family protein. | 0.677 |
SFP06552.1 | dnaK | SAMN05216234_10585 | SAMN05216234_13616 | DnaJ domain-containing protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.998 |
SFP06552.1 | rpoC | SAMN05216234_10585 | SAMN05216234_102129 | DnaJ domain-containing protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.477 |
SFP22686.1 | SFP83189.1 | SAMN05216234_11120 | SAMN05216234_1456 | Hypothetical protein. | Sir2 family protein. | 0.595 |
SFP24788.1 | SFP83189.1 | SAMN05216234_1122 | SAMN05216234_1456 | Curved DNA-binding protein. | Sir2 family protein. | 0.616 |
SFP24788.1 | dnaK | SAMN05216234_1122 | SAMN05216234_13616 | Curved DNA-binding protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.999 |
SFP24788.1 | rpoC | SAMN05216234_1122 | SAMN05216234_102129 | Curved DNA-binding protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.477 |
SFP49808.1 | SFP83189.1 | SAMN05216234_12224 | SAMN05216234_1456 | Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Sir2 family protein. | 0.578 |
SFP49808.1 | acsA | SAMN05216234_12224 | SAMN05216234_10496 | Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.922 |
SFP49808.1 | nadE | SAMN05216234_12224 | SAMN05216234_104106 | Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.468 |
SFP83189.1 | SFP06552.1 | SAMN05216234_1456 | SAMN05216234_10585 | Sir2 family protein. | DnaJ domain-containing protein. | 0.677 |
SFP83189.1 | SFP22686.1 | SAMN05216234_1456 | SAMN05216234_11120 | Sir2 family protein. | Hypothetical protein. | 0.595 |
SFP83189.1 | SFP24788.1 | SAMN05216234_1456 | SAMN05216234_1122 | Sir2 family protein. | Curved DNA-binding protein. | 0.616 |
SFP83189.1 | SFP49808.1 | SAMN05216234_1456 | SAMN05216234_12224 | Sir2 family protein. | Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.578 |
SFP83189.1 | SFP88595.1 | SAMN05216234_1456 | SAMN05216234_1521 | Sir2 family protein. | ATP-dependent DNA helicase RecQ. | 0.623 |
SFP83189.1 | acsA | SAMN05216234_1456 | SAMN05216234_10496 | Sir2 family protein. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.630 |
SFP83189.1 | dnaJ | SAMN05216234_1456 | SAMN05216234_10624 | Sir2 family protein. | Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] | 0.616 |
SFP83189.1 | dnaK | SAMN05216234_1456 | SAMN05216234_13616 | Sir2 family protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.758 |
SFP83189.1 | nadE | SAMN05216234_1456 | SAMN05216234_104106 | Sir2 family protein. | NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.805 |
SFP83189.1 | rpoC | SAMN05216234_1456 | SAMN05216234_102129 | Sir2 family protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.590 |
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