Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFO91356.1 | SFP24788.1 | SAMN05216234_1024 | SAMN05216234_1122 | Hypothetical protein. | Curved DNA-binding protein. | 0.652 |
SFO91356.1 | SFP94213.1 | SAMN05216234_1024 | SAMN05216234_1616 | Hypothetical protein. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.953 |
SFO91356.1 | fusA | SAMN05216234_1024 | SAMN05216234_102132 | Hypothetical protein. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.989 |
SFO91356.1 | rplM | SAMN05216234_1024 | SAMN05216234_10279 | Hypothetical protein. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.941 |
SFO91356.1 | rplN | SAMN05216234_1024 | SAMN05216234_12633 | Hypothetical protein. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.914 |
SFO91356.1 | rplO | SAMN05216234_1024 | SAMN05216234_12625 | Hypothetical protein. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.918 |
SFO91356.1 | rplU | SAMN05216234_1024 | SAMN05216234_11938 | Hypothetical protein. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.877 |
SFO93960.1 | SFP24788.1 | SAMN05216234_102114 | SAMN05216234_1122 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | Curved DNA-binding protein. | 0.652 |
SFO93960.1 | SFP94213.1 | SAMN05216234_102114 | SAMN05216234_1616 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.953 |
SFO93960.1 | fusA | SAMN05216234_102114 | SAMN05216234_102132 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.989 |
SFO93960.1 | rplM | SAMN05216234_102114 | SAMN05216234_10279 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.941 |
SFO93960.1 | rplN | SAMN05216234_102114 | SAMN05216234_12633 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.914 |
SFO93960.1 | rplO | SAMN05216234_102114 | SAMN05216234_12625 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.918 |
SFO93960.1 | rplU | SAMN05216234_102114 | SAMN05216234_11938 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.877 |
SFP24788.1 | SFO91356.1 | SAMN05216234_1122 | SAMN05216234_1024 | Curved DNA-binding protein. | Hypothetical protein. | 0.652 |
SFP24788.1 | SFO93960.1 | SAMN05216234_1122 | SAMN05216234_102114 | Curved DNA-binding protein. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.652 |
SFP24788.1 | SFP76291.1 | SAMN05216234_1122 | SAMN05216234_1393 | Curved DNA-binding protein. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.652 |
SFP24788.1 | SFP94213.1 | SAMN05216234_1122 | SAMN05216234_1616 | Curved DNA-binding protein. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.921 |
SFP24788.1 | fusA | SAMN05216234_1122 | SAMN05216234_102132 | Curved DNA-binding protein. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.924 |
SFP24788.1 | htpG | SAMN05216234_1122 | SAMN05216234_13115 | Curved DNA-binding protein. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.991 |
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