STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108734902Probable ATP-dependent RNA helicase DDX47; Belongs to the DEAD box helicase family. (462 aa)    
Predicted Functional Partners:
LOC108738110
Neuroguidin.
   
 0.998
LOC108733260
ESF1 homolog.
   
 
 0.995
LOC108736895
Protein RRP5 homolog.
  
 0.990
LOC108740405
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.989
LOC108742766
Probable ATP-dependent RNA helicase DDX52; Belongs to the DEAD box helicase family.
  
0.989
LOC108744416
Nucleolar protein 14 homolog isoform X1.
   
 0.986
LOC108740291
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.972
LOC108744420
Probable rRNA-processing protein EBP2 homolog isoform X2.
   
 0.968
LOC108732824
DDB1- and CUL4-associated factor 13.
   
 0.967
LOC108735086
Probable ATP-dependent RNA helicase DDX49; Belongs to the DEAD box helicase family.
  
 
0.967
Your Current Organism:
Agrilus planipennis
NCBI taxonomy Id: 224129
Other names: A. planipennis, Agrilus feretrius, Agrilus marcopoli, emerald ash borer
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