STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108736596E3 ubiquitin-protein ligase. (855 aa)    
Predicted Functional Partners:
LOC108734313
Mothers against decapentaplegic homolog.
    
 0.995
LOC108742660
ubiquitin-40S ribosomal protein S27a.
    
 0.995
LOC108745143
ubiquitin-60S ribosomal protein L40.
    
 0.992
LOC108743450
26S proteasome non-ATPase regulatory subunit 4.
    
 0.979
LOC108743166
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.965
LOC108732571
Ubiquitin-conjugating enzyme E2 L3 isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.957
LOC108742335
Ubiquitin-conjugating enzyme E2-22 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.954
LOC108733106
TNF receptor-associated factor 6.
    
 0.953
LOC108735347
E3 ubiquitin-protein ligase CBL-B isoform X2.
    
 0.950
LOC108738927
Segment polarity protein dishevelled homolog DVL-3.
    
 0.946
Your Current Organism:
Agrilus planipennis
NCBI taxonomy Id: 224129
Other names: A. planipennis, Agrilus feretrius, Agrilus marcopoli, emerald ash borer
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.