STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108741591Ubiquitin carboxyl-terminal hydrolase. (967 aa)    
Predicted Functional Partners:
LOC108738918
Probable ATP-dependent RNA helicase DHX34.
   
 
 0.995
LOC108745170
Uncharacterized protein LOC108745170.
    
 0.846
LOC108741509
28S ribosomal protein S9, mitochondrial.
   
 
 0.825
LOC108742643
39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.817
LOC108733106
TNF receptor-associated factor 6.
    
 0.813
LOC108740209
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.810
LOC108734388
Probable 28S ribosomal protein S16, mitochondrial.
    
 
 0.809
LOC108735496
Uncharacterized protein LOC108735496.
   
 0.805
LOC108740440
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.805
LOC108741324
39S ribosomal protein L21, mitochondrial.
   
 
 0.802
Your Current Organism:
Agrilus planipennis
NCBI taxonomy Id: 224129
Other names: A. planipennis, Agrilus feretrius, Agrilus marcopoli, emerald ash borer
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