STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1087443262',5'-phosphodiesterase 12-like. (654 aa)    
Predicted Functional Partners:
LOC108742093
CCR4-NOT transcription complex subunit 1.
    
 0.917
LOC108732862
Cell differentiation protein RCD1 homolog.
    
 0.916
LOC108733422
CCR4-NOT transcription complex subunit 7 isoform X1.
    
 0.915
LOC108737206
CCR4-NOT transcription complex subunit 3 isoform X1.
    
 0.905
LOC108737217
Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.
    
 0.833
LOC108739073
Parafibromin.
   
 
 0.777
LOC108743166
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.763
LOC108739699
RNA polymerase II-associated factor 1 homolog.
    
   0.762
LOC108740296
Protein PAT1 homolog 1.
    
 
 0.742
LOC108743151
CCR4-NOT transcription complex subunit 11.
    
 0.719
Your Current Organism:
Agrilus planipennis
NCBI taxonomy Id: 224129
Other names: A. planipennis, Agrilus feretrius, Agrilus marcopoli, emerald ash borer
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.