STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaJPutative lipoprotein YdaJ; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type lp: lipoprotein (362 aa)    
Predicted Functional Partners:
ydaM
Uncharacterized glycosyltransferase YdaM; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
 
  
 0.997
ydaL
Conserved hypothetical protein; Uncharacterized protein YdaL; Evidence 4: Homologs of previously reported genes of unknown function
 
   
 0.996
ydaN
Uncharacterized protein YdaN; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator
 
   
 0.996
ydaK
Uncharacterized membrane protein YdaK; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component
 
   
 0.995
yhcK
Uncharacterized protein YhcK; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
     
 0.921
ytrP
Uncharacterized protein YtrP; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
     
 0.824
ykoW
Putative sensor diguanylate cyclase; Probable signaling protein whose physiological role is not yet known
     
 0.792
ytrC
Acetoin utilization transport system permease protein; Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation
  
     0.734
rapE
Response regulator aspartate phosphatase e; Belongs to the RAP family
 
   
 0.727
ypfA
Uncharacterized protein YpfA; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator
      
 0.712
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.