STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaKUncharacterized membrane protein YdaK; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component (283 aa)    
Predicted Functional Partners:
ydaN
Uncharacterized protein YdaN; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator
 
   
 0.997
ydaJ
Putative lipoprotein YdaJ; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type lp: lipoprotein
 
   
 0.995
ydaM
Uncharacterized glycosyltransferase YdaM; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
 
   
 0.995
ydaL
Conserved hypothetical protein; Uncharacterized protein YdaL; Evidence 4: Homologs of previously reported genes of unknown function
 
   
 0.993
ytrP
Uncharacterized protein YtrP; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
 
 
 0.982
ykoW
Putative sensor diguanylate cyclase; Probable signaling protein whose physiological role is not yet known
 
 
 0.980
ykuI
Uncharacterized EAL-domain containing protein YkuI; Evidence 4: Homologs of previously reported genes of unknown function
 
 
 0.938
yhcK
Uncharacterized protein YhcK; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
  
   
 0.926
ypfA
Uncharacterized protein YpfA; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator
      
 0.918
cheA
Two-component system, chemotaxis family, sensor kinase chea; Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. CheA is autophosphorylated; it can transfer its phosphate group to CheB, CheY or CheV
   
 
 0.789
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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