STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaNUncharacterized protein YdaN; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator (703 aa)    
Predicted Functional Partners:
ydaK
Uncharacterized membrane protein YdaK; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component
 
   
 0.997
ydaJ
Putative lipoprotein YdaJ; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type lp: lipoprotein
 
   
 0.996
ydaM
Uncharacterized glycosyltransferase YdaM; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
 
   
 0.996
ydaL
Conserved hypothetical protein; Uncharacterized protein YdaL; Evidence 4: Homologs of previously reported genes of unknown function
 
   
 0.995
ytrP
Uncharacterized protein YtrP; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
 
   
 0.922
ypfA
Uncharacterized protein YpfA; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator
  
   
 0.895
yhcK
Uncharacterized protein YhcK; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
     
 0.890
ykoW
Putative sensor diguanylate cyclase; Probable signaling protein whose physiological role is not yet known
     
 0.883
epsK
Putative extracellular matrix component exporter; May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles
  
   
 0.790
yclG
Uncharacterized protein YclG; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
  
     0.779
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.