STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaSConserved hypothetical protein; UPF0410 protein YdaS; Evidence 4: Homologs of previously reported genes of unknown function (85 aa)    
Predicted Functional Partners:
ydaT
Conserved hypothetical protein; Uncharacterized protein YdaT; Evidence 4: Homologs of previously reported genes of unknown function
       0.622
gsiB
Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation
 
    0.563
mntH
H(+)-stimulated, divalent metal cation uptake system. Involved in manganese uptake. Can probably also transport cadmium, cobalt, copper and zinc, but not iron. May be the predominant transporter of manganese during logarithmic phase growth
       0.450
ydbA
Conserved hypothetical protein; Uncharacterized protein YdbA; Evidence 4: Homologs of previously reported genes of unknown function
       0.442
ymaD
Putative peroxiredoxin-related protein; Belongs to the OsmC/Ohr family
  
    0.431
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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