Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| bmrU | gsiB | BSU24000 | BSU04400 | Putative lipid kinase bmru; May catalyze the ATP-dependent phosphorylation of lipids other than diacylglycerol (DAG). In fact, is not able to exhibit diacylglycerol kinase activity in vitro | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | 0.624 |
| bmrU | ydaE | BSU24000 | BSU04200 | Putative lipid kinase bmru; May catalyze the ATP-dependent phosphorylation of lipids other than diacylglycerol (DAG). In fact, is not able to exhibit diacylglycerol kinase activity in vitro | Conserved hypothetical protein; Belongs to the D-lyxose ketol-isomerase family | 0.901 |
| ctc | gsiB | BSU00520 | BSU04400 | 50S ribosomal protein L25/general stress protein Ctc; Not required for exponential growth; probably functions in vegetatively growing cells, maybe required for accurate translation under stress conditions | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | 0.890 |
| ctc | hpf | BSU00520 | BSU35310 | 50S ribosomal protein L25/general stress protein Ctc; Not required for exponential growth; probably functions in vegetatively growing cells, maybe required for accurate translation under stress conditions | Ribosome-associated sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. May not be the only factor implicated . Might negatively regulate the activity of the sigma-54 factor (SigL) | 0.996 |
| ctc | sigB | BSU00520 | BSU04730 | 50S ribosomal protein L25/general stress protein Ctc; Not required for exponential growth; probably functions in vegetatively growing cells, maybe required for accurate translation under stress conditions | Rna polymerase sigma-37 factor (sigma(b)); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation. May play a role in the ability of the bacterium to adapt to various stresses but is not essential for its survival under these conditions. Positively regulates expression of its own operon | 0.909 |
| gsiB | bmrU | BSU04400 | BSU24000 | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | Putative lipid kinase bmru; May catalyze the ATP-dependent phosphorylation of lipids other than diacylglycerol (DAG). In fact, is not able to exhibit diacylglycerol kinase activity in vitro | 0.624 |
| gsiB | ctc | BSU04400 | BSU00520 | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | 50S ribosomal protein L25/general stress protein Ctc; Not required for exponential growth; probably functions in vegetatively growing cells, maybe required for accurate translation under stress conditions | 0.890 |
| gsiB | gspA | BSU04400 | BSU38430 | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | General stress protein A; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : putative enzyme | 0.902 |
| gsiB | hpf | BSU04400 | BSU35310 | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | Ribosome-associated sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. May not be the only factor implicated . Might negatively regulate the activity of the sigma-54 factor (SigL) | 0.596 |
| gsiB | sigB | BSU04400 | BSU04730 | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | Rna polymerase sigma-37 factor (sigma(b)); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation. May play a role in the ability of the bacterium to adapt to various stresses but is not essential for its survival under these conditions. Positively regulates expression of its own operon | 0.583 |
| gsiB | ydaE | BSU04400 | BSU04200 | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | Conserved hypothetical protein; Belongs to the D-lyxose ketol-isomerase family | 0.585 |
| gsiB | ydaS | BSU04400 | BSU04370 | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | Conserved hypothetical protein; UPF0410 protein YdaS; Evidence 4: Homologs of previously reported genes of unknown function | 0.563 |
| gsiB | ydbA | BSU04400 | BSU04390 | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | Conserved hypothetical protein; Uncharacterized protein YdbA; Evidence 4: Homologs of previously reported genes of unknown function | 0.591 |
| gsiB | yhdF | BSU04400 | BSU09450 | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | Putative nad(p)-dependent dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family | 0.589 |
| gsiB | yrpG | BSU04400 | BSU26850 | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | Putative oxidoreductase; Belongs to the aldo/keto reductase family. Aldo/keto reductase 2 subfamily | 0.585 |
| gspA | gsiB | BSU38430 | BSU04400 | General stress protein A; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : putative enzyme | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | 0.902 |
| gspA | ydaE | BSU38430 | BSU04200 | General stress protein A; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : putative enzyme | Conserved hypothetical protein; Belongs to the D-lyxose ketol-isomerase family | 0.402 |
| hpf | ctc | BSU35310 | BSU00520 | Ribosome-associated sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. May not be the only factor implicated . Might negatively regulate the activity of the sigma-54 factor (SigL) | 50S ribosomal protein L25/general stress protein Ctc; Not required for exponential growth; probably functions in vegetatively growing cells, maybe required for accurate translation under stress conditions | 0.996 |
| hpf | gsiB | BSU35310 | BSU04400 | Ribosome-associated sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. May not be the only factor implicated . Might negatively regulate the activity of the sigma-54 factor (SigL) | Glucose starvation-inducible protein b; Involved in an adaptive response to nutrient deprivation other than sporulation | 0.596 |
| hpf | sigB | BSU35310 | BSU04730 | Ribosome-associated sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. May not be the only factor implicated . Might negatively regulate the activity of the sigma-54 factor (SigL) | Rna polymerase sigma-37 factor (sigma(b)); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation. May play a role in the ability of the bacterium to adapt to various stresses but is not essential for its survival under these conditions. Positively regulates expression of its own operon | 0.522 |
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