STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydbDPutative manganese-containing catalase; Belongs to the manganese catalase family (273 aa)    
Predicted Functional Partners:
sodC
Superoxide dismutase-like protein YojM; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type lp: lipoprotein
     
 0.956
sodA
Superoxide dismutase, fe-mn family; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems
     
 0.940
sodF
Superoxide dismutase, fe-mn family; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems
     
 0.911
katX
Major catalase in spores; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide
      
 0.679
yhdF
Putative nad(p)-dependent dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family
  
   
 0.678
dctB
C4-dicarboxylate-binding protein DctB; Part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. Responsible for growth on fumarate and succinate but not malate. Is not directly involved in C4-dicarboxylate uptake, but plays a sensory role in the DctS/DctR two-component system which regulates the expression of the dctA C4-dicarboxylate transporter
       0.610
yetF
Conserved hypothetical protein; UPF0702 transmembrane protein YetF; Evidence 4: Homologs of previously reported genes of unknown function
      
 0.610
adhB
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily
 
     0.587
ydaE
Conserved hypothetical protein; Belongs to the D-lyxose ketol-isomerase family
      
 0.586
spoVAEB
Stage V sporulation protein AEB; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process
      
 0.580
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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