STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgAConserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. (80 aa)    
Predicted Functional Partners:
ydgB
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
  
0.945
cotP
Spore coat protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor.
  
  
 0.940
gerT
Component of the spore coat; Involved in spore germination; probably required at the earliest stage of germination.
  
  
 0.847
ywrJ
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 14762006.
   
  
 0.838
ysnD
Inner spore coat protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process.
   
  
 0.797
cgeC
Protein involved in maturation of the outermost layer of the spore; May be involved in maturation of the outermost layer of the spore.
   
  
 0.786
cotM
Spore coat protein (outer); Involved in spore outer coat assembly. May be part of a cross-linked insoluble skeleton that surrounds the spore, serves as a matrix for the assembly of additional outer coat material, and confers structural stability to the final structure.
  
  
 0.738
ypqA
Hypothetical protein; Evidence 5: No homology to any previously reported sequences; Belongs to the small heat shock protein (HSP20) family.
  
    0.674
ytlA
Putative ABC transporter component; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter.
   
    0.673
cotT
Spore coat protein (inner coat); Inner spore coat protein which seems to play a role in germination.
   
  
 0.667
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.