STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgFD-serine/d-alanine/glycine transporter; Probable amino-acid or metabolite transport protein (458 aa)    
Predicted Functional Partners:
ydgE
Putative n-acetyltransferase; Belongs to the acetyltransferase family
      
 0.910
yvaD
Uncharacterized protein YvaD; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component
      
 0.909
yvaE
Uncharacterized membrane protein YvaE; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter
      
 0.909
yvdS
Paired small multidrug resistance pump; Uncharacterized membrane protein YvdS; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component
      
 0.909
yvdR
Quaternary ammonium compound-resistance protein suge; Uncharacterized membrane protein YvdR; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt : putative transporter
      
 0.903
ykkD
Paired small multidrug resistance pump; Probably involved in guanidinium transport . In vitro, confers resistance to a broad range of toxic compounds such as cationic dyes, neutral and anionic antimicrobials
      
 0.902
ebrB
Small multidrug efflux transporter; Part of a multidrug efflux pump. Confers resistance to cationic lipophilic dyes such as ethidium bromide, acriflavine, pyronine Y and safranin O. The efflux is probably coupled to an influx of protons (By similarity)
      
 0.902
ebrA
Small multidrug resistance efflux transporter; Part of a multidrug efflux pump. Confers resistance to cationic lipophilic dyes such as ethidium bromide, acriflavine, pyronine Y and safranin O. The efflux is probably coupled to an influx of protons (By similarity)
      
 0.901
ykkC
Paired small multidrug resistance pump; Probably involved in guanidinium transport . In vitro, confers resistance to a broad range of toxic compounds such as cationic dyes, neutral and anionic antimicrobials
      
 0.713
dinB
Nuclease inhibitor; Protein DinB; Evidence 2b: Function of strongly homologous gene; Product type r : regulator
       0.492
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.