Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| coiA | ydiL | BSU11530 | BSU06010 | Protein involved in establishment of DNA transport in competence; Required for optimal transformation. | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | 0.664 |
| coiA | yrrS | BSU11530 | BSU27300 | Protein involved in establishment of DNA transport in competence; Required for optimal transformation. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 14679248. | 0.528 |
| coiA | ytmP | BSU11530 | BSU29920 | Protein involved in establishment of DNA transport in competence; Required for optimal transformation. | Putative kinase/phosphotransferase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme; Belongs to the aminoglycoside phosphotransferase family. | 0.452 |
| coiA | ytpQ | BSU11530 | BSU29830 | Protein involved in establishment of DNA transport in competence; Required for optimal transformation. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 12719520, 21949854; Belongs to the UPF0354 family. | 0.411 |
| coiA | ytxK | BSU11530 | BSU29480 | Protein involved in establishment of DNA transport in competence; Required for optimal transformation. | Putative nucleic acid methyltransferase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme; To type I restriction system adenine methylases. | 0.763 |
| groES | ydiK | BSU06020 | BSU06000 | Chaperonin small subunit; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter; Belongs to the GroES chaperonin family. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.500 |
| groES | ydiL | BSU06020 | BSU06010 | Chaperonin small subunit; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter; Belongs to the GroES chaperonin family. | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | 0.605 |
| iolF | ydiL | BSU39710 | BSU06010 | Inositol transport protein; Minor myo-inositol uptake transporter. Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | 0.685 |
| lytD | ydiL | BSU35780 | BSU06010 | Exported N-acetylglucosaminidase (major autolysin) (CWBP90); Cell wall hydrolase not involved in cell autolysis, competence, sporulation or germination. It hydrolyzes the beta-1,4 glycan bond between the N-acetylglucosaminyl and the N-acetylmuramoyl residues in the glycan chain. | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | 0.606 |
| lytD | ytpQ | BSU35780 | BSU29830 | Exported N-acetylglucosaminidase (major autolysin) (CWBP90); Cell wall hydrolase not involved in cell autolysis, competence, sporulation or germination. It hydrolyzes the beta-1,4 glycan bond between the N-acetylglucosaminyl and the N-acetylmuramoyl residues in the glycan chain. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 12719520, 21949854; Belongs to the UPF0354 family. | 0.501 |
| ydiK | groES | BSU06000 | BSU06020 | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | Chaperonin small subunit; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter; Belongs to the GroES chaperonin family. | 0.500 |
| ydiK | ydiL | BSU06000 | BSU06010 | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | 0.924 |
| ydiL | coiA | BSU06010 | BSU11530 | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | Protein involved in establishment of DNA transport in competence; Required for optimal transformation. | 0.664 |
| ydiL | groES | BSU06010 | BSU06020 | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | Chaperonin small subunit; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter; Belongs to the GroES chaperonin family. | 0.605 |
| ydiL | iolF | BSU06010 | BSU39710 | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | Inositol transport protein; Minor myo-inositol uptake transporter. Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. | 0.685 |
| ydiL | lytD | BSU06010 | BSU35780 | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | Exported N-acetylglucosaminidase (major autolysin) (CWBP90); Cell wall hydrolase not involved in cell autolysis, competence, sporulation or germination. It hydrolyzes the beta-1,4 glycan bond between the N-acetylglucosaminyl and the N-acetylmuramoyl residues in the glycan chain. | 0.606 |
| ydiL | ydiK | BSU06010 | BSU06000 | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.924 |
| ydiL | yrrS | BSU06010 | BSU27300 | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 14679248. | 0.614 |
| ydiL | ysoA | BSU06010 | BSU28240 | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | Putative hydrolase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. | 0.692 |
| ydiL | ytmP | BSU06010 | BSU29920 | Putative membrane protease; May function as endopeptidase which proteolytically removes the C-terminal three residues of farnesylated peptides containing the CAAX motif where C is cysteine, A is an aliphatic amino acid and X is any amino acid; Belongs to the peptidase U48 family. | Putative kinase/phosphotransferase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme; Belongs to the aminoglycoside phosphotransferase family. | 0.625 |
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