Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| comEC | cwlP | BSU25570 | BSU21350 | Dna channel for uptake in competent cells; The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding | Lytic transglycosylase; Belongs to the transglycosylase Slt family | 0.458 |
| comEC | recA | BSU25570 | BSU16940 | Dna channel for uptake in competent cells; The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding | Multifunctional protein involved in homologous recombination, DNA repair and competence Can catalyze the hydrolysis of (d)ATP in the presence of single-stranded DNA; prefers dATP at least in vitro, catalyzes the dATP-dependent uptake of single- stranded DNA by duplex DNA, and the dATP-dependent hybridization of homologous single-stranded DNAs (strand exchange) . RecA-ATP cannot catalyze homologous DNA strand exchange; SsbA and DprA activate strand exchange by RecA-ATP . It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Hydrolysis of ATP in the pre [...] | 0.964 |
| comEC | uvrC | BSU25570 | BSU28490 | Dna channel for uptake in competent cells; The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding | Excinuclease abc (subunit c); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision | 0.718 |
| comEC | yebC | BSU25570 | BSU06380 | Dna channel for uptake in competent cells; The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding | Uncharacterized protein YebC; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component | 0.587 |
| cwlP | comEC | BSU21350 | BSU25570 | Lytic transglycosylase; Belongs to the transglycosylase Slt family | Dna channel for uptake in competent cells; The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding | 0.458 |
| cwlP | recA | BSU21350 | BSU16940 | Lytic transglycosylase; Belongs to the transglycosylase Slt family | Multifunctional protein involved in homologous recombination, DNA repair and competence Can catalyze the hydrolysis of (d)ATP in the presence of single-stranded DNA; prefers dATP at least in vitro, catalyzes the dATP-dependent uptake of single- stranded DNA by duplex DNA, and the dATP-dependent hybridization of homologous single-stranded DNAs (strand exchange) . RecA-ATP cannot catalyze homologous DNA strand exchange; SsbA and DprA activate strand exchange by RecA-ATP . It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Hydrolysis of ATP in the pre [...] | 0.662 |
| cwlP | scpA | BSU21350 | BSU23220 | Lytic transglycosylase; Belongs to the transglycosylase Slt family | Chromosome condensation and partitioning factor; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves | 0.624 |
| cwlP | yebC | BSU21350 | BSU06380 | Lytic transglycosylase; Belongs to the transglycosylase Slt family | Uncharacterized protein YebC; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component | 0.592 |
| cydB | yebC | BSU38750 | BSU06380 | Cytochrome bd ubiquinol oxidase subunit 2; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type e: enzyme | Uncharacterized protein YebC; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component | 0.619 |
| pth | recA | BSU00530 | BSU16940 | Peptidyl-trna hydrolase, pth1 family; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis | Multifunctional protein involved in homologous recombination, DNA repair and competence Can catalyze the hydrolysis of (d)ATP in the presence of single-stranded DNA; prefers dATP at least in vitro, catalyzes the dATP-dependent uptake of single- stranded DNA by duplex DNA, and the dATP-dependent hybridization of homologous single-stranded DNAs (strand exchange) . RecA-ATP cannot catalyze homologous DNA strand exchange; SsbA and DprA activate strand exchange by RecA-ATP . It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Hydrolysis of ATP in the pre [...] | 0.519 |
| pth | yebC | BSU00530 | BSU06380 | Peptidyl-trna hydrolase, pth1 family; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis | Uncharacterized protein YebC; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component | 0.871 |
| pth | yrdC | BSU00530 | BSU26760 | Peptidyl-trna hydrolase, pth1 family; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis | Hypothetical protein; Belongs to the isochorismatase family | 0.459 |
| recA | comEC | BSU16940 | BSU25570 | Multifunctional protein involved in homologous recombination, DNA repair and competence Can catalyze the hydrolysis of (d)ATP in the presence of single-stranded DNA; prefers dATP at least in vitro, catalyzes the dATP-dependent uptake of single- stranded DNA by duplex DNA, and the dATP-dependent hybridization of homologous single-stranded DNAs (strand exchange) . RecA-ATP cannot catalyze homologous DNA strand exchange; SsbA and DprA activate strand exchange by RecA-ATP . It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Hydrolysis of ATP in the pre [...] | Dna channel for uptake in competent cells; The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding | 0.964 |
| recA | cwlP | BSU16940 | BSU21350 | Multifunctional protein involved in homologous recombination, DNA repair and competence Can catalyze the hydrolysis of (d)ATP in the presence of single-stranded DNA; prefers dATP at least in vitro, catalyzes the dATP-dependent uptake of single- stranded DNA by duplex DNA, and the dATP-dependent hybridization of homologous single-stranded DNAs (strand exchange) . RecA-ATP cannot catalyze homologous DNA strand exchange; SsbA and DprA activate strand exchange by RecA-ATP . It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Hydrolysis of ATP in the pre [...] | Lytic transglycosylase; Belongs to the transglycosylase Slt family | 0.662 |
| recA | pth | BSU16940 | BSU00530 | Multifunctional protein involved in homologous recombination, DNA repair and competence Can catalyze the hydrolysis of (d)ATP in the presence of single-stranded DNA; prefers dATP at least in vitro, catalyzes the dATP-dependent uptake of single- stranded DNA by duplex DNA, and the dATP-dependent hybridization of homologous single-stranded DNAs (strand exchange) . RecA-ATP cannot catalyze homologous DNA strand exchange; SsbA and DprA activate strand exchange by RecA-ATP . It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Hydrolysis of ATP in the pre [...] | Peptidyl-trna hydrolase, pth1 family; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis | 0.519 |
| recA | uvrC | BSU16940 | BSU28490 | Multifunctional protein involved in homologous recombination, DNA repair and competence Can catalyze the hydrolysis of (d)ATP in the presence of single-stranded DNA; prefers dATP at least in vitro, catalyzes the dATP-dependent uptake of single- stranded DNA by duplex DNA, and the dATP-dependent hybridization of homologous single-stranded DNAs (strand exchange) . RecA-ATP cannot catalyze homologous DNA strand exchange; SsbA and DprA activate strand exchange by RecA-ATP . It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Hydrolysis of ATP in the pre [...] | Excinuclease abc (subunit c); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision | 0.962 |
| recA | yebC | BSU16940 | BSU06380 | Multifunctional protein involved in homologous recombination, DNA repair and competence Can catalyze the hydrolysis of (d)ATP in the presence of single-stranded DNA; prefers dATP at least in vitro, catalyzes the dATP-dependent uptake of single- stranded DNA by duplex DNA, and the dATP-dependent hybridization of homologous single-stranded DNAs (strand exchange) . RecA-ATP cannot catalyze homologous DNA strand exchange; SsbA and DprA activate strand exchange by RecA-ATP . It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Hydrolysis of ATP in the pre [...] | Uncharacterized protein YebC; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component | 0.516 |
| scpA | cwlP | BSU23220 | BSU21350 | Chromosome condensation and partitioning factor; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves | Lytic transglycosylase; Belongs to the transglycosylase Slt family | 0.624 |
| scpA | yebC | BSU23220 | BSU06380 | Chromosome condensation and partitioning factor; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves | Uncharacterized protein YebC; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component | 0.642 |
| uvrC | comEC | BSU28490 | BSU25570 | Excinuclease abc (subunit c); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision | Dna channel for uptake in competent cells; The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding | 0.718 |
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