Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| araP | rhgQ | BSU28740 | BSU06990 | Arabinosaccharide transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | 0.851 |
| araP | yesO | BSU28740 | BSU06970 | Arabinosaccharide transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane | Multiple sugar transport system substrate-binding protein; May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls | 0.651 |
| frlN | rhgQ | BSU32590 | BSU06990 | Raffinose/stachyose/melibiose transport system permease protein; Probably part of the binding-protein-dependent transport system YurMNO. Probably responsible for the translocation of the substrate across the membrane | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | 0.849 |
| frlN | yesO | BSU32590 | BSU06970 | Raffinose/stachyose/melibiose transport system permease protein; Probably part of the binding-protein-dependent transport system YurMNO. Probably responsible for the translocation of the substrate across the membrane | Multiple sugar transport system substrate-binding protein; May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls | 0.716 |
| rhgH | rhgP | BSU07000 | BSU06980 | Unsaturated rhamnogalacturonyl hydrolase; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | 0.985 |
| rhgH | rhgQ | BSU07000 | BSU06990 | Unsaturated rhamnogalacturonyl hydrolase; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | 0.983 |
| rhgH | rhgT | BSU07000 | BSU07020 | Unsaturated rhamnogalacturonyl hydrolase; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar | Rhamnogalacturonan acetylesterase rhgt; May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls. This enzyme has a broad substrate specificity, and shows strong preference for glucose pentaacetate, beta-naphthylacetate, and p-nitrophenyl acetate (pNPA). Also active toward acetylated xylan | 0.991 |
| rhgH | rhgZ | BSU07000 | BSU07080 | Unsaturated rhamnogalacturonyl hydrolase; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar | Beta-galactosidase yesz; May play a role in the degradation of rhamnogalacturonan derived from plant cell walls | 0.932 |
| rhgH | yesM | BSU07000 | BSU06950 | Unsaturated rhamnogalacturonyl hydrolase; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar | Two-component system, sensor histidine kinase yesm; Member of the two-component regulatory system YesM/YesN. Probably activates YesN by phosphorylation | 0.962 |
| rhgH | yesN | BSU07000 | BSU06960 | Unsaturated rhamnogalacturonyl hydrolase; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar | Two-component system, response regulator yesn; Member of the two-component regulatory system YesM/YesN | 0.970 |
| rhgH | yesO | BSU07000 | BSU06970 | Unsaturated rhamnogalacturonyl hydrolase; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar | Multiple sugar transport system substrate-binding protein; May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls | 0.989 |
| rhgH | yesS | BSU07000 | BSU07010 | Unsaturated rhamnogalacturonyl hydrolase; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar | Transcriptional regulator (arac/xyls family); Probable transcription factor regulating the pathway responsible for rhamnogalacturonan depolymerization | 0.980 |
| rhgP | rhgH | BSU06980 | BSU07000 | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | Unsaturated rhamnogalacturonyl hydrolase; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar | 0.985 |
| rhgP | rhgQ | BSU06980 | BSU06990 | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | 0.998 |
| rhgP | rhgT | BSU06980 | BSU07020 | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | Rhamnogalacturonan acetylesterase rhgt; May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls. This enzyme has a broad substrate specificity, and shows strong preference for glucose pentaacetate, beta-naphthylacetate, and p-nitrophenyl acetate (pNPA). Also active toward acetylated xylan | 0.976 |
| rhgP | rhgZ | BSU06980 | BSU07080 | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | Beta-galactosidase yesz; May play a role in the degradation of rhamnogalacturonan derived from plant cell walls | 0.953 |
| rhgP | yesM | BSU06980 | BSU06950 | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | Two-component system, sensor histidine kinase yesm; Member of the two-component regulatory system YesM/YesN. Probably activates YesN by phosphorylation | 0.956 |
| rhgP | yesN | BSU06980 | BSU06960 | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | Two-component system, response regulator yesn; Member of the two-component regulatory system YesM/YesN | 0.958 |
| rhgP | yesO | BSU06980 | BSU06970 | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | Multiple sugar transport system substrate-binding protein; May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls | 0.997 |
| rhgP | yesS | BSU06980 | BSU07010 | Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) | Transcriptional regulator (arac/xyls family); Probable transcription factor regulating the pathway responsible for rhamnogalacturonan depolymerization | 0.973 |
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