STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhgQMultiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity) (296 aa)    
Predicted Functional Partners:
rhgP
Multiple sugar transport system permease protein; Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane (By similarity)
 
 0.998
yesO
Multiple sugar transport system substrate-binding protein; May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls
 
 0.997
rhgH
Unsaturated rhamnogalacturonyl hydrolase; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar
     
 0.983
rhgT
Rhamnogalacturonan acetylesterase rhgt; May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls. This enzyme has a broad substrate specificity, and shows strong preference for glucose pentaacetate, beta-naphthylacetate, and p-nitrophenyl acetate (pNPA). Also active toward acetylated xylan
    
 0.982
yesS
Transcriptional regulator (arac/xyls family); Probable transcription factor regulating the pathway responsible for rhamnogalacturonan depolymerization
 
   
 0.976
yesN
Two-component system, response regulator yesn; Member of the two-component regulatory system YesM/YesN
     
 0.962
yesM
Two-component system, sensor histidine kinase yesm; Member of the two-component regulatory system YesM/YesN. Probably activates YesN by phosphorylation
     
 0.956
rhgZ
Beta-galactosidase yesz; May play a role in the degradation of rhamnogalacturonan derived from plant cell walls
 
   
 0.947
araP
Arabinosaccharide transport system permease protein; Part of the binding-protein-dependent transport system for L- arabinose. Probably responsible for the translocation of the substrate across the membrane
 
 0.851
frlN
Raffinose/stachyose/melibiose transport system permease protein; Probably part of the binding-protein-dependent transport system YurMNO. Probably responsible for the translocation of the substrate across the membrane
 
 0.849
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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