STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yflHUncharacterized protein YflH; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 1070366, 1266368 (104 aa)    
Predicted Functional Partners:
mapB
Methionine aminopeptidase 2; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed
     
 0.864
ydeC
Uncharacterized HTH-type transcriptional regulator YdeC; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator
      
 0.851
mtrB
Transcription attenuation protein MtrB; Required for transcription attenuation control in the trp operon. This trans-acting factor binds to trinucleotide repeats (GAG or UAG) located in the trp leader transcript causing transcription termination. Binds the leader RNA only in presence of L-tryptophan
  
     0.663
yflI
Uncharacterized protein YflI; Evidence 4: Homologs of previously reported genes of unknown function
       0.570
nagP
PTS system N-acetylglucosamine-specific EIICB component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This system is involved in N-acetylglucosamine transport (By similarity)
     
 0.560
gerR
Uncharacterized protein YlbO; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type r: regulator
  
     0.535
csbD
Stress response protein CsbD; Evidence 7: Gene remnant
  
     0.501
dnaD
DNA replication protein DnaD; Probable component of primosome involved in the initiation of DNA replication
  
     0.469
yurQ
Uncharacterized protein YurQ; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme
  
     0.458
ypzG
Uncharacterized protein YpzG; Evidence 4: Homologs of previously reported genes of unknown function
      
 0.414
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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