STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaBConserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. (114 aa)    
Predicted Functional Partners:
yphF
Putative lipoprotein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type lp: lipoprotein.
      
 0.847
yizD
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
      
 0.752
ykzB
Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 10671441.
      
 0.751
kipR
Transcriptional regulator (IclR family); Transcriptional repressor of the kip gene-containing operon.
      
 0.745
rghRA
Transcriptional repressor; Represses the expression of yvaM and both rapG and rapH. Binds directly to the promoter regions of yvaM, rapG and rapH.
      
 0.680
sspE
Small acid-soluble spore protein (gamma-type SASP); SASP are proteins degraded in the first minutes of spore germination and provide amino acids for both new protein synthesis and metabolism. These proteins may be involved in dormant spore's high resistance to UV light.
       0.597
spoIIB
Stage II sporulation protein B; Involved in endospore development.
   
    0.597
spoVR
Involved in spore cortex synthesis (stage V sporulation); Appears to be involved in spore cortex formation.
   
 
 0.592
ygaC
Putative factor; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the UPF0374 family.
       0.550
glgD
Glucose-1-phosphate adenylyltransferase (ADP-glucose pyrophosphorylase) beta subunit; Required for the synthesis of glycogen; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
    0.539
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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