Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| atpI | hmoB | BSU36880 | BSU10100 | ATP synthase (subunit i); A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex; Belongs to the bacterial AtpI family. | Heme-degrading monooxygenase; Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. | 0.502 |
| atpI | yhzD | BSU36880 | BSU09889 | ATP synthase (subunit i); A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex; Belongs to the bacterial AtpI family. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.722 |
| atpI | yojO | BSU36880 | BSU19380 | ATP synthase (subunit i); A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex; Belongs to the bacterial AtpI family. | Putative activator of nitric oxide reductase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator. | 0.443 |
| atpI | yozC | BSU36880 | BSU19300 | ATP synthase (subunit i); A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex; Belongs to the bacterial AtpI family. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.479 |
| atpI | ytpI | BSU36880 | BSU29260 | ATP synthase (subunit i); A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex; Belongs to the bacterial AtpI family. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.770 |
| comK | hmoB | BSU10420 | BSU10100 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Heme-degrading monooxygenase; Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. | 0.479 |
| comK | yhzD | BSU10420 | BSU09889 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.661 |
| comK | ylxL | BSU10420 | BSU16480 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Coupling factor for flagellin transcription and translation; Required for swarming motility and for maximal sigma-D activity. | 0.555 |
| comK | yozC | BSU10420 | BSU19300 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.668 |
| hmoB | atpI | BSU10100 | BSU36880 | Heme-degrading monooxygenase; Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. | ATP synthase (subunit i); A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex; Belongs to the bacterial AtpI family. | 0.502 |
| hmoB | comK | BSU10100 | BSU10420 | Heme-degrading monooxygenase; Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | 0.479 |
| hmoB | yhzD | BSU10100 | BSU09889 | Heme-degrading monooxygenase; Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.719 |
| hmoB | yozC | BSU10100 | BSU19300 | Heme-degrading monooxygenase; Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.472 |
| hmoB | ytpI | BSU10100 | BSU29260 | Heme-degrading monooxygenase; Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.418 |
| yhaQ | yhzD | BSU09890 | BSU09889 | Na+-efflux ABC transporter (ATP-binding protein); Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; transporter. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.597 |
| yhzD | atpI | BSU09889 | BSU36880 | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | ATP synthase (subunit i); A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex; Belongs to the bacterial AtpI family. | 0.722 |
| yhzD | comK | BSU09889 | BSU10420 | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | 0.661 |
| yhzD | hmoB | BSU09889 | BSU10100 | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | Heme-degrading monooxygenase; Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. | 0.719 |
| yhzD | yhaQ | BSU09889 | BSU09890 | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | Na+-efflux ABC transporter (ATP-binding protein); Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; transporter. | 0.597 |
| yhzD | yitV | BSU09889 | BSU11150 | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | Putative hydrolase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. | 0.637 |
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