Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dltA | xkdA | BSU38500 | BSU12500 | D-alanine:D-alanyl-carrier protein ligase; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Belongs to the ATP [...] | PBSX phage protein, putative peptidase; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin; To B.subtilis YqaB. | 0.409 |
xkdA | dltA | BSU12500 | BSU38500 | PBSX phage protein, putative peptidase; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin; To B.subtilis YqaB. | D-alanine:D-alanyl-carrier protein ligase; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Belongs to the ATP [...] | 0.409 |
xkdA | xkdB | BSU12500 | BSU12520 | PBSX phage protein, putative peptidase; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin; To B.subtilis YqaB. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; To B.subtilis YqaL. | 0.409 |
xkdA | xre | BSU12500 | BSU12510 | PBSX phage protein, putative peptidase; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin; To B.subtilis YqaB. | Phage PBSX transcriptional regulator; Repressor of PBSX. Binds to four sites close to its own gene. Necessary for the maintenance of the lysogenic state. | 0.735 |
xkdA | ywcE | BSU12500 | BSU38130 | PBSX phage protein, putative peptidase; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin; To B.subtilis YqaB. | Protein required for proper spore morphogenesis and germination; Required for proper spore morphogenesis. Important for spore germination; Belongs to the YwcE family. | 0.889 |
xkdB | xkdA | BSU12520 | BSU12500 | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; To B.subtilis YqaL. | PBSX phage protein, putative peptidase; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin; To B.subtilis YqaB. | 0.409 |
xkdB | xre | BSU12520 | BSU12510 | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; To B.subtilis YqaL. | Phage PBSX transcriptional regulator; Repressor of PBSX. Binds to four sites close to its own gene. Necessary for the maintenance of the lysogenic state. | 0.514 |
xre | xkdA | BSU12510 | BSU12500 | Phage PBSX transcriptional regulator; Repressor of PBSX. Binds to four sites close to its own gene. Necessary for the maintenance of the lysogenic state. | PBSX phage protein, putative peptidase; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin; To B.subtilis YqaB. | 0.735 |
xre | xkdB | BSU12510 | BSU12520 | Phage PBSX transcriptional regulator; Repressor of PBSX. Binds to four sites close to its own gene. Necessary for the maintenance of the lysogenic state. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; To B.subtilis YqaL. | 0.514 |
ywcE | xkdA | BSU38130 | BSU12500 | Protein required for proper spore morphogenesis and germination; Required for proper spore morphogenesis. Important for spore germination; Belongs to the YwcE family. | PBSX phage protein, putative peptidase; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin; To B.subtilis YqaB. | 0.889 |