STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xtrAPBSX phage protein, homolog of YqaO of the skin element; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin; To B.subtilis YqaO. (68 aa)    
Predicted Functional Partners:
xkdC
Conserved hypothetical protein in PBSX phage element; May function as a transcriptional antiterminator.
  
  
 0.997
xkdB
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; To B.subtilis YqaL.
  
  
 0.996
xkdD
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
  
 0.995
yqaH
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
      
 0.919
yqaE
Putative transcriptional regulator (Xre family); Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator.
      
 0.890
xpf
Putative RNA polymerase PBSX sigma factor-like; Positive regulatory protein that acts at the late promoter PL.
  
    0.863
xlyA
Bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase; Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella and sporulation.
  
  
 0.764
xtmB
PBSX defective prophage terminase (large subunit); Functions as a terminase; To B.subtilis YqaT and phage SPP1 terminase large subunit.
  
    0.745
xtmA
PBSX defective prophage terminase (small subunit); Functions as a terminase; To B.subtilis YqaS and B.subtilis phage SPP1 terminase small subunit.
  
    0.743
yjzJ
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.703
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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