Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xpfPutative RNA polymerase PBSX sigma factor-like; Positive regulatory protein that acts at the late promoter PL. (169 aa)    
Predicted Functional Partners:
xkdB
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; To B.subtilis YqaL.
  
    0.898
xkdD
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.874
xtmA
PBSX defective prophage terminase (small subunit); Functions as a terminase; To B.subtilis YqaS and B.subtilis phage SPP1 terminase small subunit.
  
    0.873
xtrA
PBSX phage protein, homolog of YqaO of the skin element; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin; To B.subtilis YqaO.
  
    0.863
xtmB
PBSX defective prophage terminase (large subunit); Functions as a terminase; To B.subtilis YqaT and phage SPP1 terminase large subunit.
  
    0.861
xkdE
Putative phage capsid protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type ps: putative structure; Belongs to the phage portal family. PBSX subfamily.
  
    0.860
xkdC
Conserved hypothetical protein in PBSX phage element; May function as a transcriptional antiterminator.
  
    0.854
xkdG
Putative capsid protein of PBSX prophage; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type ps: putative structure.
  
    0.830
xkdF
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; To B.subtilis YqbD.
  
    0.827
xkdM
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; To B.subtilis YqbM.
  
    0.814
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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