Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cotE | sspD | BSU17030 | BSU13470 | Morphogenic protein required for the assembly of the outer coat of the endospore. Is also a regulatory protein for the expression of cotA, cotB, cotC, cotH and other genes encoding spore outer coat proteins | Small acid-soluble spore protein d (minor alpha/beta-type sasp); SASP are bound to spore DNA. They are double-stranded DNA- binding proteins that cause DNA to change to an a-like conformation. They protect the DNA backbone from chemical and enzymatic cleavage and are thus involved in dormant spore's high resistance to UV light | 0.703 |
| cotE | sspE | BSU17030 | BSU08660 | Morphogenic protein required for the assembly of the outer coat of the endospore. Is also a regulatory protein for the expression of cotA, cotB, cotC, cotH and other genes encoding spore outer coat proteins | Small acid-soluble spore protein e (minor gamma-type sasp); SASP are proteins degraded in the first minutes of spore germination and provide amino acids for both new protein synthesis and metabolism. These proteins may be involved in dormant spore's high resistance to UV light | 0.652 |
| cotE | sspF | BSU17030 | BSU00450 | Morphogenic protein required for the assembly of the outer coat of the endospore. Is also a regulatory protein for the expression of cotA, cotB, cotC, cotH and other genes encoding spore outer coat proteins | Small acid-soluble spore protein f (minor alpha/beta-type sasp); May play some important role in either sporulation or the dormant spore | 0.460 |
| cotE | yabP | BSU17030 | BSU00600 | Morphogenic protein required for the assembly of the outer coat of the endospore. Is also a regulatory protein for the expression of cotA, cotB, cotC, cotH and other genes encoding spore outer coat proteins | Spore protein involved in the shaping of the spore coat; Required for sporulation | 0.643 |
| gpr | spoVAC | BSU25540 | BSU23420 | Germination protease; Initiates the degradation of small, acid-soluble proteins during spore germination | Stage V sporulation protein AC; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | 0.894 |
| gpr | spoVAEB | BSU25540 | BSU23402 | Germination protease; Initiates the degradation of small, acid-soluble proteins during spore germination | Stage V sporulation protein AEB; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | 0.786 |
| gpr | spoVAF | BSU25540 | BSU23390 | Germination protease; Initiates the degradation of small, acid-soluble proteins during spore germination | Stage V sporulation protein AF; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | 0.827 |
| gpr | sspD | BSU25540 | BSU13470 | Germination protease; Initiates the degradation of small, acid-soluble proteins during spore germination | Small acid-soluble spore protein d (minor alpha/beta-type sasp); SASP are bound to spore DNA. They are double-stranded DNA- binding proteins that cause DNA to change to an a-like conformation. They protect the DNA backbone from chemical and enzymatic cleavage and are thus involved in dormant spore's high resistance to UV light | 0.746 |
| gpr | sspE | BSU25540 | BSU08660 | Germination protease; Initiates the degradation of small, acid-soluble proteins during spore germination | Small acid-soluble spore protein e (minor gamma-type sasp); SASP are proteins degraded in the first minutes of spore germination and provide amino acids for both new protein synthesis and metabolism. These proteins may be involved in dormant spore's high resistance to UV light | 0.544 |
| gpr | sspF | BSU25540 | BSU00450 | Germination protease; Initiates the degradation of small, acid-soluble proteins during spore germination | Small acid-soluble spore protein f (minor alpha/beta-type sasp); May play some important role in either sporulation or the dormant spore | 0.745 |
| gpr | yabP | BSU25540 | BSU00600 | Germination protease; Initiates the degradation of small, acid-soluble proteins during spore germination | Spore protein involved in the shaping of the spore coat; Required for sporulation | 0.796 |
| gpr | yfkQ | BSU25540 | BSU07790 | Germination protease; Initiates the degradation of small, acid-soluble proteins during spore germination | Uncharacterized membrane protein YfkQ; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : putative factor | 0.768 |
| gpr | yndD | BSU25540 | BSU17750 | Germination protease; Initiates the degradation of small, acid-soluble proteins during spore germination | Uncharacterized membrane protein YndD; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : putative factor | 0.753 |
| spoVAC | gpr | BSU23420 | BSU25540 | Stage V sporulation protein AC; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | Germination protease; Initiates the degradation of small, acid-soluble proteins during spore germination | 0.894 |
| spoVAC | spoVAEB | BSU23420 | BSU23402 | Stage V sporulation protein AC; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | Stage V sporulation protein AEB; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | 0.937 |
| spoVAC | spoVAF | BSU23420 | BSU23390 | Stage V sporulation protein AC; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | Stage V sporulation protein AF; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | 0.995 |
| spoVAC | sspD | BSU23420 | BSU13470 | Stage V sporulation protein AC; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | Small acid-soluble spore protein d (minor alpha/beta-type sasp); SASP are bound to spore DNA. They are double-stranded DNA- binding proteins that cause DNA to change to an a-like conformation. They protect the DNA backbone from chemical and enzymatic cleavage and are thus involved in dormant spore's high resistance to UV light | 0.708 |
| spoVAC | yabP | BSU23420 | BSU00600 | Stage V sporulation protein AC; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | Spore protein involved in the shaping of the spore coat; Required for sporulation | 0.779 |
| spoVAC | yfkQ | BSU23420 | BSU07790 | Stage V sporulation protein AC; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | Uncharacterized membrane protein YfkQ; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : putative factor | 0.796 |
| spoVAC | yndD | BSU23420 | BSU17750 | Stage V sporulation protein AC; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process | Uncharacterized membrane protein YndD; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : putative factor | 0.790 |
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