Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cca | spbC | BSU22450 | BSU33770 | Trna nucleotidyltransferase (cca-adding enzyme); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Has no poly(A) polymerase activity | Killing factor sdpc; Produces a 42-residue extracellular sporulation delaying protein (SDP) that collapses the proton motive force (probably both the membrane potential and pH gradient) across the cell membrane, which leads to autolysis; may form a proton channel . Induces the lysis of other B.subtilis cells that have not entered the sporulation pathway, inducing cannibalism to provide a source of nutrients to support sporulation, and at the same time delaying commitment to the energetically expensive and irreversible onset of sporulation . Addition of SDP to liquid cultures halts grow [...] | 0.442 |
| cca | yknU | BSU22450 | BSU14320 | Trna nucleotidyltransferase (cca-adding enzyme); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Has no poly(A) polymerase activity | Uncharacterized ABC transporter ATP-binding protein YknU; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter | 0.438 |
| cca | yknV | BSU22450 | BSU14330 | Trna nucleotidyltransferase (cca-adding enzyme); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Has no poly(A) polymerase activity | Uncharacterized ABC transporter ATP-binding protein YknV; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter | 0.468 |
| cca | yknW | BSU22450 | BSU14340 | Trna nucleotidyltransferase (cca-adding enzyme); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Has no poly(A) polymerase activity | Hypothetical protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein). Has a role in the assembly of the YknXYZ complex | 0.722 |
| cca | yknX | BSU22450 | BSU14350 | Trna nucleotidyltransferase (cca-adding enzyme); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Has no poly(A) polymerase activity | Hlyd family secretion protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein) | 0.693 |
| cca | yknY | BSU22450 | BSU14360 | Trna nucleotidyltransferase (cca-adding enzyme); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Has no poly(A) polymerase activity | Putative abc transport system atp-binding protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein) | 0.723 |
| cca | yknZ | BSU22450 | BSU14370 | Trna nucleotidyltransferase (cca-adding enzyme); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Has no poly(A) polymerase activity | Putative abc transport system permease protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein) | 0.711 |
| sdpI | spbC | BSU33780 | BSU33770 | Integral membrane regulator of autophagy; Immunity protein that provides protection for the cell against the toxic effects of SDP, its own SdpC-derived killing factor, and that functions as a receptor/signal transduction protein as well. Once SDP accumulates in the extracellular milieu, SdpI binds to SDP, causing sequestration of SdpR at the bacterial membrane | Killing factor sdpc; Produces a 42-residue extracellular sporulation delaying protein (SDP) that collapses the proton motive force (probably both the membrane potential and pH gradient) across the cell membrane, which leads to autolysis; may form a proton channel . Induces the lysis of other B.subtilis cells that have not entered the sporulation pathway, inducing cannibalism to provide a source of nutrients to support sporulation, and at the same time delaying commitment to the energetically expensive and irreversible onset of sporulation . Addition of SDP to liquid cultures halts grow [...] | 0.776 |
| sdpI | yknW | BSU33780 | BSU14340 | Integral membrane regulator of autophagy; Immunity protein that provides protection for the cell against the toxic effects of SDP, its own SdpC-derived killing factor, and that functions as a receptor/signal transduction protein as well. Once SDP accumulates in the extracellular milieu, SdpI binds to SDP, causing sequestration of SdpR at the bacterial membrane | Hypothetical protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein). Has a role in the assembly of the YknXYZ complex | 0.730 |
| spbC | cca | BSU33770 | BSU22450 | Killing factor sdpc; Produces a 42-residue extracellular sporulation delaying protein (SDP) that collapses the proton motive force (probably both the membrane potential and pH gradient) across the cell membrane, which leads to autolysis; may form a proton channel . Induces the lysis of other B.subtilis cells that have not entered the sporulation pathway, inducing cannibalism to provide a source of nutrients to support sporulation, and at the same time delaying commitment to the energetically expensive and irreversible onset of sporulation . Addition of SDP to liquid cultures halts grow [...] | Trna nucleotidyltransferase (cca-adding enzyme); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Has no poly(A) polymerase activity | 0.442 |
| spbC | sdpI | BSU33770 | BSU33780 | Killing factor sdpc; Produces a 42-residue extracellular sporulation delaying protein (SDP) that collapses the proton motive force (probably both the membrane potential and pH gradient) across the cell membrane, which leads to autolysis; may form a proton channel . Induces the lysis of other B.subtilis cells that have not entered the sporulation pathway, inducing cannibalism to provide a source of nutrients to support sporulation, and at the same time delaying commitment to the energetically expensive and irreversible onset of sporulation . Addition of SDP to liquid cultures halts grow [...] | Integral membrane regulator of autophagy; Immunity protein that provides protection for the cell against the toxic effects of SDP, its own SdpC-derived killing factor, and that functions as a receptor/signal transduction protein as well. Once SDP accumulates in the extracellular milieu, SdpI binds to SDP, causing sequestration of SdpR at the bacterial membrane | 0.776 |
| spbC | yknW | BSU33770 | BSU14340 | Killing factor sdpc; Produces a 42-residue extracellular sporulation delaying protein (SDP) that collapses the proton motive force (probably both the membrane potential and pH gradient) across the cell membrane, which leads to autolysis; may form a proton channel . Induces the lysis of other B.subtilis cells that have not entered the sporulation pathway, inducing cannibalism to provide a source of nutrients to support sporulation, and at the same time delaying commitment to the energetically expensive and irreversible onset of sporulation . Addition of SDP to liquid cultures halts grow [...] | Hypothetical protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein). Has a role in the assembly of the YknXYZ complex | 0.902 |
| spbC | yknX | BSU33770 | BSU14350 | Killing factor sdpc; Produces a 42-residue extracellular sporulation delaying protein (SDP) that collapses the proton motive force (probably both the membrane potential and pH gradient) across the cell membrane, which leads to autolysis; may form a proton channel . Induces the lysis of other B.subtilis cells that have not entered the sporulation pathway, inducing cannibalism to provide a source of nutrients to support sporulation, and at the same time delaying commitment to the energetically expensive and irreversible onset of sporulation . Addition of SDP to liquid cultures halts grow [...] | Hlyd family secretion protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein) | 0.880 |
| spbC | yknY | BSU33770 | BSU14360 | Killing factor sdpc; Produces a 42-residue extracellular sporulation delaying protein (SDP) that collapses the proton motive force (probably both the membrane potential and pH gradient) across the cell membrane, which leads to autolysis; may form a proton channel . Induces the lysis of other B.subtilis cells that have not entered the sporulation pathway, inducing cannibalism to provide a source of nutrients to support sporulation, and at the same time delaying commitment to the energetically expensive and irreversible onset of sporulation . Addition of SDP to liquid cultures halts grow [...] | Putative abc transport system atp-binding protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein) | 0.886 |
| spbC | yknZ | BSU33770 | BSU14370 | Killing factor sdpc; Produces a 42-residue extracellular sporulation delaying protein (SDP) that collapses the proton motive force (probably both the membrane potential and pH gradient) across the cell membrane, which leads to autolysis; may form a proton channel . Induces the lysis of other B.subtilis cells that have not entered the sporulation pathway, inducing cannibalism to provide a source of nutrients to support sporulation, and at the same time delaying commitment to the energetically expensive and irreversible onset of sporulation . Addition of SDP to liquid cultures halts grow [...] | Putative abc transport system permease protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein) | 0.881 |
| yfiG | yknW | BSU08260 | BSU14340 | Putative metabolite transport protein YfiG; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter | Hypothetical protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein). Has a role in the assembly of the YknXYZ complex | 0.713 |
| yfiG | yknX | BSU08260 | BSU14350 | Putative metabolite transport protein YfiG; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter | Hlyd family secretion protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein) | 0.658 |
| yfiG | yknY | BSU08260 | BSU14360 | Putative metabolite transport protein YfiG; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter | Putative abc transport system atp-binding protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein) | 0.665 |
| yfiG | yknZ | BSU08260 | BSU14370 | Putative metabolite transport protein YfiG; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter | Putative abc transport system permease protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein) | 0.668 |
| ygaO | yknW | BSU08890 | BSU14340 | Uncharacterized lipoprotein YgaO; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component | Hypothetical protein; Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation- delaying protein). Has a role in the assembly of the YknXYZ complex | 0.721 |
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