Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cyeA | eglS | BSU18770 | BSU18130 | Cysteine and O-acetyl serine efflux permease; Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; transporter. | Endo-1,4-beta-glucanase; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type e: enzyme. | 0.845 |
cyeA | oxdC | BSU18770 | BSU33240 | Cysteine and O-acetyl serine efflux permease; Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; transporter. | Oxalate decarboxylase; Converts oxalate to formate and CO(2) in an O(2)-dependent reaction. Can also catalyze minor side reactions: oxalate oxidation to produce H(2)O(2), and oxalate-dependent, H(2)O(2)-independent dye oxidations. | 0.485 |
cyeA | yoaU | BSU18770 | BSU18760 | Cysteine and O-acetyl serine efflux permease; Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; transporter. | Putative transcriptional regulator (LysR family); Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator; Belongs to the LysR transcriptional regulatory family. | 0.555 |
eglS | cyeA | BSU18130 | BSU18770 | Endo-1,4-beta-glucanase; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type e: enzyme. | Cysteine and O-acetyl serine efflux permease; Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; transporter. | 0.845 |
oxdC | cyeA | BSU33240 | BSU18770 | Oxalate decarboxylase; Converts oxalate to formate and CO(2) in an O(2)-dependent reaction. Can also catalyze minor side reactions: oxalate oxidation to produce H(2)O(2), and oxalate-dependent, H(2)O(2)-independent dye oxidations. | Cysteine and O-acetyl serine efflux permease; Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; transporter. | 0.485 |
yoaU | cyeA | BSU18760 | BSU18770 | Putative transcriptional regulator (LysR family); Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator; Belongs to the LysR transcriptional regulatory family. | Cysteine and O-acetyl serine efflux permease; Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; transporter. | 0.555 |