Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| gerE | spoIIID | BSU28410 | BSU36420 | Transcriptional regulator; Involved in the regulation of spore formation. Directs the transcription of several genes that encode structural components of the protein coat that encases the mature spore (CotB, CotC, CotG, CotS, CotV, CotW, CotX, CotY and CotZ). Controls also the cgeAB and cgeCDE operons. | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | 0.917 |
| gerE | yobW | BSU28410 | BSU19110 | Transcriptional regulator; Involved in the regulation of spore formation. Directs the transcription of several genes that encode structural components of the protein coat that encases the mature spore (CotB, CotC, CotG, CotS, CotV, CotW, CotX, CotY and CotZ). Controls also the cgeAB and cgeCDE operons. | Mother cell-specific membrane sporulation protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor. | 0.570 |
| spoIIID | gerE | BSU36420 | BSU28410 | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | Transcriptional regulator; Involved in the regulation of spore formation. Directs the transcription of several genes that encode structural components of the protein coat that encases the mature spore (CotB, CotC, CotG, CotS, CotV, CotW, CotX, CotY and CotZ). Controls also the cgeAB and cgeCDE operons. | 0.917 |
| spoIIID | spoVR | BSU36420 | BSU09400 | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | Involved in spore cortex synthesis (stage V sporulation); Appears to be involved in spore cortex formation. | 0.731 |
| spoIIID | yknT | BSU36420 | BSU14250 | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 15383836, 15743949. | 0.674 |
| spoIIID | yobW | BSU36420 | BSU19110 | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | Mother cell-specific membrane sporulation protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor. | 0.561 |
| spoVR | spoIIID | BSU09400 | BSU36420 | Involved in spore cortex synthesis (stage V sporulation); Appears to be involved in spore cortex formation. | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | 0.731 |
| spoVR | yjcA | BSU09400 | BSU11790 | Involved in spore cortex synthesis (stage V sporulation); Appears to be involved in spore cortex formation. | Sporulation-specific protein; Involved in sporulation. | 0.504 |
| spoVR | yknT | BSU09400 | BSU14250 | Involved in spore cortex synthesis (stage V sporulation); Appears to be involved in spore cortex formation. | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 15383836, 15743949. | 0.671 |
| spoVR | yobW | BSU09400 | BSU19110 | Involved in spore cortex synthesis (stage V sporulation); Appears to be involved in spore cortex formation. | Mother cell-specific membrane sporulation protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor. | 0.459 |
| yjcA | spoVR | BSU11790 | BSU09400 | Sporulation-specific protein; Involved in sporulation. | Involved in spore cortex synthesis (stage V sporulation); Appears to be involved in spore cortex formation. | 0.504 |
| yjcA | yobW | BSU11790 | BSU19110 | Sporulation-specific protein; Involved in sporulation. | Mother cell-specific membrane sporulation protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor. | 0.502 |
| yknT | spoIIID | BSU14250 | BSU36420 | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 15383836, 15743949. | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | 0.674 |
| yknT | spoVR | BSU14250 | BSU09400 | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 15383836, 15743949. | Involved in spore cortex synthesis (stage V sporulation); Appears to be involved in spore cortex formation. | 0.671 |
| yknT | yobW | BSU14250 | BSU19110 | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 15383836, 15743949. | Mother cell-specific membrane sporulation protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor. | 0.797 |
| yknT | yteV | BSU14250 | BSU30080 | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 15383836, 15743949. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 8990290. | 0.681 |
| yobV | yobW | BSU19100 | BSU19110 | Putative transcriptional regulator; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator. | Mother cell-specific membrane sporulation protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor. | 0.505 |
| yobW | gerE | BSU19110 | BSU28410 | Mother cell-specific membrane sporulation protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor. | Transcriptional regulator; Involved in the regulation of spore formation. Directs the transcription of several genes that encode structural components of the protein coat that encases the mature spore (CotB, CotC, CotG, CotS, CotV, CotW, CotX, CotY and CotZ). Controls also the cgeAB and cgeCDE operons. | 0.570 |
| yobW | spoIIID | BSU19110 | BSU36420 | Mother cell-specific membrane sporulation protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor. | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | 0.561 |
| yobW | spoVR | BSU19110 | BSU09400 | Mother cell-specific membrane sporulation protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor. | Involved in spore cortex synthesis (stage V sporulation); Appears to be involved in spore cortex formation. | 0.459 |
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