STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yoqRHypothetical protein; Evidence 5: No homology to any previously reported sequences. (118 aa)    
Predicted Functional Partners:
yoqS
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.934
yoqP
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.933
yoqN
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
   
    0.718
yoqJ
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
   
    0.584
yoqO
Putative membrane protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component.
  
    0.555
yosL
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
   
    0.540
yorK
Putative single-strand DNA-specific exonuclease; Putative single-stranded-DNA-specific exonuclease.
   
    0.520
yoqG
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
   
    0.515
yoqC
Putative nucleotide-binding protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor.
   
    0.506
yorJ
Putative DNA replication initiation protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme.
   
    0.503
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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