STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yopXHypothetical protein; Evidence 5: No homology to any previously reported sequences. (134 aa)    
Predicted Functional Partners:
yopY
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.934
yoqA
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.921
yopZ
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.902
yopW
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.882
yoqC
Putative nucleotide-binding protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor.
  
    0.867
yoqB
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.808
yoqD
Putative DNA-binding protein anti-repressor; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.807
dnaD
DNA-remodelling primosomal protein; Probable component of primosome involved in the initiation of DNA replication.
  
  
 0.715
yoqH
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.651
yoqF
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.636
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.