Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yomSPutative phage-related lytic exoenzyme; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. (118 aa)    
Predicted Functional Partners:
yomR
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.936
yomP
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.931
yomQ
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.929
yomO
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.901
bhlB
Holin-like bacteriophage SPbeta protein; May be involved in the secretion of the autolysin BlyA; Belongs to the SPP1 holin family.
   
  
 0.901
yomX
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.891
yomT
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.888
yomN
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.888
xlyB
N-acetylmuramoyl-L-alanine amidase; Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella and sporulation.
   
  
 0.882
yomW
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.872
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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