Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yomMPutative integrase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme; Belongs to the 'phage' integrase family. (333 aa)    
Predicted Functional Partners:
yomO
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.896
yomN
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.892
yomS
Putative phage-related lytic exoenzyme; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme.
  
    0.842
yomZ
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.813
yomV
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.808
yomU
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.803
yomX
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.802
yomR
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.790
yomQ
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.787
yomW
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
  
    0.739
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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