STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yomLConserved hypothetical protein; SPBc2 prophage-derived uncharacterized protein YomL; Evidence 4: Homologs of previously reported genes of unknown function (228 aa)    
Predicted Functional Partners:
youB
Uncharacterized membrane protein YdzM/YouB; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 10931276
     
 0.936
yoqM
SPBc2 prophage-derived uncharacterized protein YoqM; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component
      
 0.730
yopU
Hypothetical protein; SPBc2 prophage-derived uncharacterized protein YopU; Evidence 5: No homology to any previously reported sequences
      
 0.730
yopT
Hypothetical protein; SPBc2 prophage-derived uncharacterized protein YopT; Evidence 5: No homology to any previously reported sequences
      
 0.730
yhfH
Hypothetical protein; Uncharacterized protein YhfH; Evidence 4: Homologs of previously reported genes of unknown function
      
 0.723
ywhL
Conserved hypothetical protein; Uncharacterized protein YwhL; Evidence 4: Homologs of previously reported genes of unknown function
      
 0.723
ydhE
Putative glycosyltransferase; Belongs to the UDP-glycosyltransferase family
      
 0.712
yqhY
Conserved hypothetical protein; Belongs to the asp23 family
      
 0.675
ytkA
Uncharacterized protein YtkA; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type lp: lipoprotein
      
 0.648
yonN
Putative hu-related dna-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
      
 0.647
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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