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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yokAPutative DNA recombinase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme; In the N-terminal section; belongs to the site-specific recombinase resolvase family. (545 aa)    
Predicted Functional Partners:
yotN
Putative capsular polysaccharide biosynthesis enzyme fragment; Evidence 7: Gene remnant; putative enzyme.
      
 0.980
yokB
Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 10376821.
  
    0.735
yokD
Aminoglycoside N3'-acetyltransferase; May contribute to antibiotic resistance; Belongs to the antibiotic N-acetyltransferase family.
   
  
 0.733
yorZ
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
      
 0.680
yefB
Putative site-specific recombinase / invertase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme.
 
    0.645
yorE
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
      
 0.577
yonR
Putative transcriptional regulator (Xre family); Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator.
 
  
 0.571
yomQ
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
      
 0.561
yomH
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
      
 0.561
yjcR
Putative phage-related nucleic acid binding terminase small subunit; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme.
  
    0.552
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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